KEGG   Juglans regia (English walnut): 109005832
Entry
109005832         CDS       T05245                                 
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein-like
  KO
K12857  Prp8 binding protein
Organism
jre  Juglans regia (English walnut)
Pathway
jre03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:jre00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    109005832
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:jre03041]
    109005832
Spliceosome [BR:jre03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    109005832
 Complex C
   U5 SnRNP specific factors
    109005832
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 WD40_WDHD1_1st WDR55 Beta-prop_TEP1_2nd EIF3I WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_EIPR1 Beta-prop_SPT8 NBCH_WD40 Beta-prop_RIG_2nd ANAPC4_WD40 Beta-prop_SCAP WD40_MABP1-WDR62_1st Beta-prop_IFT140_1st Beta-prop_IFT122_1st WDR90_beta-prop_4th Beta-prop_DCAF4 WD40_RFWD3 Beta-prop_WDR35_TULP_N Beta-prop_WDR19_1st eIF2A Beta-prop_WDR75_2nd Beta-prop_HPS5 Beta-prop_RIG_1st Beta-prop_DCAF12 Beta-prop_Nup120_160 Beta-prop_NWD2_C Ge1_WD40 RMC1_N Nbas_N
Other DBs
NCBI-GeneID: 109005832
NCBI-ProteinID: XP_018840431
UniProt: A0A2I4G960 A0A833TUW2
LinkDB
Position
12:complement(22630259..22634519)
AA seq 345 aa
MEVIPAWGENALSTAGPRPMEWSTVPYSGPQAPGPNGKQRTSSLESPIMLLMGHQSTIYT
MKFNPAGTVVASGSHDREIFLWNVHGDCKNFMVLKGHKNAVLDLHWTGDGSQIISASPDK
TLRAWDVETGKQIKKMAEHSSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP
DKYQITAVSFSDASDKIFTGGIDNDIKVWDLRKGEVTMTLQGHQDMITGMQLSPDGSYLL
TNGMDCKLCIWDMRPYAPQNRCVKVLEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYI
WDTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEV
NT seq 1038 nt   +upstreamnt  +downstreamnt
atggaagttattccagcatggggtgagaacgctttgtctacagctggcccaagaccaatg
gaatggtctactgtcccatatagtggtccgcaagcacctgggccaaacgggaaacagcgg
acttcaagtttggaatcgccaatcatgttgctgatgggtcaccagagcaccatctacact
atgaagttcaatccagcaggaacagtggttgcatctggatctcatgacagagaaatcttt
ttgtggaacgtacatggggattgcaagaatttcatggttttaaaaggacacaagaatgca
gttttggatcttcactggactggtgatggatcccagataatatctgccagtcctgacaaa
accctgagggcatgggatgttgaaacagggaaacagataaagaagatggctgagcactcg
tcatttgtgaattcatgttgcccttctcgaaggggaccgccactcgttgttagtggatcc
gatgatggaactgccaaactgtgggacatgcggcagaggggtgcaatccaaacatttcca
gataaatatcaaatcacagctgtcagtttctcagatgcatctgacaagatcttcacaggt
ggtattgacaatgacataaaggtatgggacttgcgcaagggtgaagtgacaatgactctt
caagggcatcaagatatgataacaggtatgcagctgagtcccgatggctcctatcttctt
acaaatggtatggactgcaagctctgcatatgggatatgcgtccatacgcaccacaaaat
cgatgtgtgaaggtattggaagggcaccaacacaacttcgaaaagaacttgttgaaatgt
ggttggtcacctgatggaagcaaagtcacggcagggagttcagatcggatggtttacata
tgggatacaacttctcgacgcatcttgtataagctccccggccatactggatcagttaat
gagtgcgtcttccatcccagtgaacctattgttggatcttgcagtagcgataaacagatt
tatctgggggaggtttag

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