Juglans regia (English walnut): 109006046
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Entry
109006046 CDS
T05245
Name
(RefSeq) sm-like protein LSM5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
jre
Juglans regia (English walnut)
Pathway
jre03018
RNA degradation
jre03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109006046
09123 Folding, sorting and degradation
03018 RNA degradation
109006046
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jre03019
]
109006046
03041 Spliceosome [BR:
jre03041
]
109006046
Messenger RNA biogenesis [BR:
jre03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109006046
mRNA degradation factors
5'-3' decay
Lsm complex
109006046
Spliceosome [BR:
jre03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
109006046
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF7452
Ntox4
Motif
Other DBs
NCBI-GeneID:
109006046
NCBI-ProteinID:
XP_018840740
UniProt:
A0A2I4HRQ0
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Position
1:16372288..16375944
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AA seq
88 aa
AA seq
DB search
MAANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEG
RRITKLDQILLNGNNIAILVPGGSPDPE
NT seq
267 nt
NT seq
+upstream
nt +downstream
nt
atggccgctaacaatccttcgcagctgctcccgtcagaactaattgataggtgcattggg
tcgaagatatgggtgataatgaagggggacaaggagctcgttggtactctcaggggcttc
gacgtctacgtcaatatggtactcgaagacgtcacagagtatgagatcactgctgaaggg
agacggataacaaagcttgatcagattttactaaatggaaacaacattgccattctcgta
cctggtggttcgcctgatccagaatga
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