KEGG   Juglans regia (English walnut): 109006046
Entry
109006046         CDS       T05245                                 
Name
(RefSeq) sm-like protein LSM5
  KO
K12624  U6 snRNA-associated Sm-like protein LSm5
Organism
jre  Juglans regia (English walnut)
Pathway
jre03018  RNA degradation
jre03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:jre00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    109006046
  09123 Folding, sorting and degradation
   03018 RNA degradation
    109006046
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:jre03019]
    109006046
   03041 Spliceosome [BR:jre03041]
    109006046
Messenger RNA biogenesis [BR:jre03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     109006046
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     109006046
Spliceosome [BR:jre03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    109006046
SSDB
Motif
Pfam: LSM DUF7452 Ntox4
Other DBs
NCBI-GeneID: 109006046
NCBI-ProteinID: XP_018840740
UniProt: A0A2I4HRQ0
LinkDB
Position
1:16372288..16375944
AA seq 88 aa
MAANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEG
RRITKLDQILLNGNNIAILVPGGSPDPE
NT seq 267 nt   +upstreamnt  +downstreamnt
atggccgctaacaatccttcgcagctgctcccgtcagaactaattgataggtgcattggg
tcgaagatatgggtgataatgaagggggacaaggagctcgttggtactctcaggggcttc
gacgtctacgtcaatatggtactcgaagacgtcacagagtatgagatcactgctgaaggg
agacggataacaaagcttgatcagattttactaaatggaaacaacattgccattctcgta
cctggtggttcgcctgatccagaatga

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