Juglans regia (English walnut): 109006251
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Entry
109006251 CDS
T05245
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 52C-like
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
jre
Juglans regia (English walnut)
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jre03019
]
109006251
03041 Spliceosome [BR:
jre03041
]
109006251
03036 Chromosome and associated proteins [BR:
jre03036
]
109006251
Enzymes [BR:
jre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109006251
Messenger RNA biogenesis [BR:
jre03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
109006251
mRNA cycle factors
Common to processing body (P body) and stress granule
109006251
Spliceosome [BR:
jre03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
109006251
Chromosome and associated proteins [BR:
jre03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
109006251
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DUF5320
Motif
Other DBs
NCBI-GeneID:
109006251
NCBI-ProteinID:
XP_018841010
UniProt:
A0A2I4GAW6
A0A834DB72
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All DBs
Position
1:40492765..40499394
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AA seq
617 aa
AA seq
DB search
MTWSDARNDSTPKPTRPARLTYIPPHLRKKCVPVPNHNAYSLPNESTHLELRNDRGRGRG
RGRGRGRFYQTERWNQNQTQTQTPFDISSKFDELDVNDDEANTESESMNLEAYEDIPVEA
SGSDIPTPVNTFAEIDLGEGLNRNIKRCNYVKPTPIQRHAIPIVMAGRDLMACAQTGSGK
TAAFCFPIISGILNGNQFTRPNRVACPVALILSPTRELSCQIHDEAKKFAYQTGVKISVA
YGGAPISQQFRNLEKGVDILVATPGRLVDMIERSRVSLRAIKYLALDEADRMLDMGFEPQ
IRKIVKEMDMPPCSERQTMFFSATFPSEIQRLASDFLSNYIFVAVGRVGSSTDLISQRVE
FVHDVDKRNHLINLLQGQRMNGTHGKNALTLVFVETKRGADALENWLSMKGFPAIAIHGD
KVQMERERALKSFRSGTTPILVATDVASRGLDVPHVAHVINFDLPKDIDDYVHRIGRTGR
AGNSGLATAFFTEKNLPLAKALVELMQEAKQEVPLWLSDYAKRASNVGGTGRTNRFGGNK
FGGYDFRRDAQSESENDYYSSTCGNAAASSYALSHAVATSDDYAAANSYGNTGVDSYTSG
SYGYGHNFSSGGASGWH
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atgacatggtctgacgctagaaacgattcaactccgaagccaactcgcccggctcgactc
acctacatccctccgcacctcaggaaaaaatgtgtccccgtacccaaccacaacgcgtac
agcttacccaatgagtcaactcacctcgagcttcgaaacgatcggggtcgcggcagaggt
cgtggtcgtggtcgtggccggttttaccagaccgagcgctggaaccaaaaccaaacacaa
acacaaaccccttttgatatctcttccaagttcgacgagctggatgtcaatgacgacgag
gccaacactgagtcagagtcgatgaatttggaggcgtacgaggacattccggtggaggcc
agtggctctgatattcctacaccggtcaacacattcgcggaaattgacttgggtgagggt
ctaaaccggaatatcaagcggtgtaactacgtgaagcccactccgattcagcgccacgcc
attcccattgtcatggctgggcgcgacctaatggcctgtgcccaaactgggtctggcaaa
accgctgcgttttgcttcccaatcatctctgggattctgaatggaaaccagtttacgagg
ccgaatcgagtcgcgtgtccggttgcgcttatcctgtccccgactcgggagttgtcttgt
cagatacatgatgaggctaagaagtttgcgtatcagactggggtcaagatctctgttgcg
tatggtggggctccaatttctcaacagttccgaaacttggaaaaaggcgtcgacatcttg
gtggctacaccggggcgattagtggatatgattgagagatcaagagtttcacttagggca
ataaaatacttggcattagatgaggctgatcgaatgcttgacatgggctttgagccccaa
atccggaagattgtcaaggaaatggacatgcctccatgcagcgaaagacagacaatgttt
ttcagtgctacattcccaagtgagatacagagacttgcatcggattttctttcaaactac
atatttgtggcagttggaagagttggttctagcactgatcttatttctcaaagagttgaa
tttgttcacgatgtggataaaagaaaccatcttatcaaccttctacaaggccagaggatg
aatggaacccatggcaagaatgctttgaccttagtatttgtggagacaaagagaggagca
gatgcattagaaaactggttgtccatgaaaggttttccagcaattgcaattcatggtgac
aaagtgcaaatggagagagaacgagctttgaaatctttcagaagtggtaccactcccatt
ttggtggcaacagatgttgcttcacgaggtttggacgtcccacatgttgcccatgtcatc
aattttgacttgccaaaagacatagatgactatgtccacaggattgggagaacaggtcgt
gctggtaactccggtctggcaactgcattcttcactgagaagaacctgcctcttgcaaag
gcacttgttgaactcatgcaggaagcaaagcaggaagttcctctttggcttagtgattat
gctaagagagcatctaatgttggtggtactggtcgaactaaccgatttgggggcaacaag
tttggtggctatgatttccgaagagatgctcaatctgagagtgagaatgattactattca
agcacttgtggcaatgctgctgcttcctcttatgctctttctcatgctgttgcaaccagt
gatgattatgctgctgctaattcctatggcaacaccggtgttgattcttatacttctggt
tcgtatggatacggacataatttttcatctggtggcgccagtggttggcactag
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