Juglans regia (English walnut): 109006573
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Entry
109006573 CDS
T05245
Name
(RefSeq) uncharacterized protein LOC109006573
KO
K14311
nuclear pore complex protein Nup188
Organism
jre
Juglans regia (English walnut)
Pathway
jre03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
109006573
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jre03019
]
109006573
Messenger RNA biogenesis [BR:
jre03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
109006573
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup188_N-subdom_III
Motif
Other DBs
NCBI-GeneID:
109006573
NCBI-ProteinID:
XP_018841446
UniProt:
A0A2I4GC06
A0A833WUS3
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All DBs
Position
16:complement(24223215..24249948)
Genome browser
AA seq
1969 aa
AA seq
DB search
MASTNSVDASLWWDPFTFLLSELENAPLSSDLPPNLVKKLRDNHTWFVGTVSCFKPPNAK
SREALNSQKIKLGTHQLSIQPELREKALNISSYLCLNEVQSYILVERSLEDNKLGAHSVV
QEFLHMILLQYYMERQCLLKCTRQILVHALHAGTGSKEGQIIREEALKLFSNGLERKLIS
VLEDLLSSSHPEQMDVDLFTLWAEETLIEDNLVLDNLFLAYYESFCSCDGGRWKNMCSLY
KGIISGAYNFGKLEISSDALNSSYRAKVQLLLILIETLDLDILLQMVHDEIPFRKGVSVF
ALPDILEMDAIISSFNALELKEASPLILAWAVFLCLSSSLPGKEENNVLMEIDHVGYVRQ
AFEAGSLNYFLEILQSDVLKETDGPIAGYRSVLRTSISAFIASYEINLQIGDSTLNSILD
VLCKIYRGEESLCIQFWDKESFIDGPIRCLLCNLEGEFPFRTIELVRFLSSLCEGTWPAE
CVYNFLDKSVGISSLCEISRDSLVDDISQIVETHLPINIPGIEGLFIPGKTRGHILKIIG
DNTALVRWEYVQSGMLVLLLRLAQEPYLDKSEEVFLTLDLLSRMVSFNTALCFALMEIGS
LLHPEETGMTETMDKNMWVAETICTLVRNLPPNSSSAALMSMCVKILGKLLKCSPSHVAA
VVLKANIFDVVLRTSVYDVDSNGSSSGSWLLSGKLAKMLLIDCEQNDNDNPLAISVLDFT
MRLVETGLEDDSVLALVVFSLQHVLVSHEYWKYKAKYVRWKVTLKVLEVMKKCILSISYY
ERLGEVIHDVLLRDSSIHHTLFRIVCTTTQTLENLYVSRLFELMEIEGLQLAMSSVLDIL
FIMISKFSKDVSSSLPIFYQAVLSCMTKPVPVVAAVISLISYFRSPAIQVGAARVLSELL
IVADYLQQYLVGNACFGLDDKQITDLRHSVNHILLEQSSWNEDLFVAIVIMLTSAANYQP
AFLVAVFSAIGSRDVQNSNGGDAKQAANETSLGPQGSRKSILVDALMHYLDRENDLINSN
PRILLNVLNFLKALWQGAAQYTHILEWLRSSENFWKHLSNYISLIAGTKDGALENLTEKE
ALDLACKYRCQSVILEIMAYEMFLQKKLSHAESLVKHGAELKDRIENAVNVEKSKAVRDI
VSNWCESSVLGNLIKSHTSCDYNNEKFFRAKVASSLFAVHVMGRLAAHDSGTLSVALLEK
IHVIWKKLSTQRAFSELLAQYSQCGYSEGKELGSLILSDLYYHIQGELEGRKIGPGPFKE
LFQYLVESKILQSYQHKYDDDLSATSKDVYLFDLVRLRADLGLDMWDYSEWKASKATAET
MLRCMQNANSMVLLANSRHSALKALITVLTVYQDQSPEQKPVGAKVRDQVFLSCIDHICQ
CFCATVESLVPILDGSDDILCFLTGQVELLLHIVRSAYESLSLLARVLVLKTLGSGLKVL
SDLRRSVMGVNTTMKLLLTLLLSTVEFTCLGTRIDGATDMESVKDSAEISNATIPLLPIL
CNCTTRAEHCTLSLMTMDFILRSLLMPNTWFPIIQHHLQLQNLILKLQDKNSFASLPIIL
KFFLTLARVRGGAEMLLNSGFFSSLRVLFAESSDGRLFSSINSEGNISSSSDKIEKPQHI
WGLGLSVVTAIIQSLGDSSTGSDIVDKMIPYFFSEKAYMIFYHLNAPDFPSDDPNKKRPR
AQRTQTSFAALQETEHTLMLMCALAKHWNSWVKSMKEMDSQLREKSIHLLAFISRGTQRH
GEASSRGAPLLCPPTLKEDFDCCKKASVIKSRSGWFALSPLGCVSKHKFTAVSTAVTIKD
QANENNDVSQTYFSDAIALKIYRIAFLILKFLCLQAEGAAKRAEELGFVDLAHFPELPMP
EILHGLQDQVAAIVTELCEANKSERIHSKIQNVCCLLLQIMEMALYLELCVLQICGIRPV
LGRVEDFSKELKLLIRATDSHAFLKASMKSLKLIILSVYPGLLQSEGFL
NT seq
5910 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcactaactccgtcgacgcctctctctggtgggacccgttcacgttcctcctt
tccgagcttgagaatgcccctctctcctctgaccttcctccaaatctggtgaagaagtta
agggacaatcacacctggttcgttggcacagtgtcgtgcttcaagccaccgaatgcgaaa
tcgagggaggctttgaattcacagaaaattaaattagggactcaccaattgagtatacag
ccggaattgagagaaaaggctttaaatatcagctcatacttgtgtttaaacgaggtgcaa
tcgtacattcttgttgaaaggtctctcgaggacaacaaattaggtgctcactctgtagtt
caagaatttcttcatatgatattgcttcagtattacatggaacgacagtgcttactaaag
tgtaccagacaaattctagtacacgccttacatgctggcactggctccaaagaaggtcag
attattagagaggaggcgctaaagctgttttccaatggacttgaaaggaaattaatatct
gtactggaagatctcctatcctccagtcatcctgagcaaatggatgttgatcttttcact
ttgtgggctgaggagacattgatagaagacaatttggttctagacaacctcttcctagca
tattatgagtcattttgtagttgcgatggtggaagatggaaaaatatgtgctccctctac
aagggaatcatatctggggcttacaactttggaaagctggaaatatcatctgatgcacta
aattcttcttatcgtgccaaagttcagctgctacttatccttatagaaaccctggacctg
gatattcttctccagatggttcatgatgaaattcctttcaggaagggtgtctctgttttt
gcattgcccgatatcctggagatggatgcaataatctccagtttcaatgctttggaattg
aaagaggccagtccactaattctagcatgggcagtgtttctttgcctaagttcatcactt
ccaggaaaggaggaaaataatgttctgatggagattgatcacgttggttatgtacgtcaa
gcctttgaggctggatccttgaattattttcttgaaattcttcaaagtgatgtactgaag
gaaacagatggacctattgctggttatcgaagtgtcctgaggacttctatttctgcattt
attgcatcgtatgagattaatcttcagataggggacagtactcttaattctatattggat
gttctctgcaaaatttatcgaggcgaggagtcactttgtattcagttctgggacaaggaa
agttttattgacggtcccattcggtgtcttctctgtaacttagagggtgaattccccttt
aggaccatagaacttgttcgctttttatcatccctctgtgaaggaacttggcctgcagaa
tgcgtgtataactttcttgacaagtcggttggcatatcatccttgtgtgagatcagtaga
gattctttggtggatgacatttcacaaattgttgaaacacacctgccaattaacattcct
ggaattgaaggtttattcattcctggaaaaacacgtggacacattttgaaaatcattggt
gataatactgctcttgtacgatgggagtatgttcagtctggcatgctggtattgcttctc
cgtttggcccaggagccgtatttggacaaaagtgaggaagttttccttactcttgacctg
cttagtcgaatggtgtcttttaacacggctttgtgttttgctttgatggagattggcagc
ttattgcatcctgaagaaactgggatgactgagacaatggacaagaatatgtgggtggct
gaaaccatttgcactttggtcagaaatctgcctccaaactccagcagtgctgctctgatg
tccatgtgtgtcaagattctgggcaagttgttgaaatgttccccatctcatgttgctgcg
gtggttctaaaggcaaatatatttgatgtggttttaaggacaagtgtctacgatgttgac
agtaatggttcatcaagtggatcatggttactttctggaaaactggcaaagatgcttcta
attgactgcgagcagaacgataacgacaacccgctggctatatcagtattggactttact
atgcggcttgtggaaacaggattagaggatgattctgtcctggctctagttgttttctcc
ctgcagcatgtgctagttagtcatgagtactggaaatacaaggcgaagtatgtgcgttgg
aaagtaacattgaaggtgctggaagttatgaaaaaatgcattttgtcaatctcatactac
gaaagattgggtgaggttattcatgacgtcttacttcgcgattcttctatccaccacaca
ctctttcgaattgtgtgtacaactacacagaccttagagaatctctatgttagccgtcta
tttgaattgatggagattgaaggattacagctcgccatgagttctgttctagatattctt
ttcatcatgatctccaaattttcaaaggatgtatcttccagccttcctatcttttatcaa
gcagtgctgtcatgtatgaccaaaccagttcctgtcgtggctgccgttatatccctaata
tcgtattttcgcagtcctgcaatccaagttggtgctgccagggtactgtcagaattgttg
attgttgcagattatttgcaacaatatttggttggcaatgcatgctttggtttggatgat
aagcagattacagatttgaggcattctgttaaccacatactacttgagcaatcatcatgg
aatgaagatctctttgttgccatagtcattatgctcacgtctgcagcaaattatcagcct
gcttttcttgttgccgtattttctgccatagggtctagagatgtccaaaatagcaatggt
ggtgatgcgaagcaagcagcaaatgaaacttcccttgggccacagggttctaggaaatca
attctggtagatgcactcatgcactatcttgatagggaaaatgatcttatcaacagcaat
cccagaatcctgttgaatgtactcaacttcttgaaggccttgtggcaaggggctgctcaa
tacacacatattctggagtggctgaggagctctgaaaatttctggaaacatttgtccaac
tatatttcgttaattgctggcactaaagatggggcccttgaaaatctgactgaaaaggag
gctctagacttggcatgtaaatatcgctgtcaatctgtaatattagaaataatggcatat
gagatgttcctgcagaagaagttgtcacatgctgaatcacttgtaaagcatggggctgag
ttgaaggacaggatagaaaatgcggtcaatgttgaaaaatcaaaagctgtgagagatatt
gtgtcaaactggtgtgagagctctgttttaggcaatctgatcaagtcacatacttcttgt
gattacaacaacgaaaaattcttccgtgcaaaggttgcttccagtttattcgccgtgcat
gtgatgggtagattagcagcccatgactcaggaacattgtctgtcgcattacttgagaag
atccatgtgatttggaaaaagttgagcactcagcgtgccttttctgaattgttggctcaa
tattctcagtgtggttacagtgaaggcaaggagcttggttctttaattctcagtgatctt
tattatcatatacaaggtgagcttgaaggccgtaaaattggtcctgggcctttcaaagaa
ctctttcagtatctagttgaatcaaagattttgcagagctatcagcataagtatgatgat
gacctttctgctacttccaaagatgtgtacttgtttgaccttgtacgcctcagagcagat
ttgggattagatatgtgggattattcggagtggaaagcatccaaagcaactgctgaaaca
atgttgcgttgcatgcagaatgcaaactcaatggtgttgcttgcaaattcaaggcattct
gcactgaaagcattaataactgttttaacagtctaccaggatcagtcaccagagcaaaaa
cctgttggagcaaaggtccgtgaccaagtctttttatcatgcattgatcatatttgccaa
tgtttctgtgccacagtagaatcattagtgccaattctggatggctctgatgatatccta
tgttttctaactggccaagtagaattgcttctccatattgtgagatctgcatatgagagt
ttgtccttgctcgctcgtgtacttgtcttaaaaaccttgggttctggccttaaagtgttg
agtgacttgaggcgatcagttatgggggttaacacgacaatgaaactcttactgacgttg
cttctatcgactgtggagtttacttgccttggtacacgaattgatggggcaacagacatg
gaatctgtcaaagactcggctgagatttcaaatgcaactattccgcttctacctattctc
tgcaactgcactactagggctgagcattgcactctctctctgatgactatggactttata
ctaagaagtctcttgatgccaaacacttggtttccaatcatacaacatcatctacaactg
cagaatttaattcttaagcttcaagataaaaattcatttgcatcccttcccataatatta
aaattctttctgacactggcacgagtgagaggaggtgctgaaatgcttcttaattctggt
tttttctcatctctgagggttttatttgctgaatcctcggatggtagacttttctcctca
attaatagtgaggggaacatctccagctcatctgacaaaattgaaaagcctcagcacata
tggggacttggcttgtcagtggttacagctataattcaatctttaggagacagttcaact
ggcagtgatattgtggacaagatgataccttacttcttctcggagaaagcttatatgata
ttttatcatctcaatgcaccagactttccatctgatgatcctaacaagaaaagacctcgg
gctcaaaggacacaaacttcttttgctgctcttcaggaaacagagcacaccctcatgcta
atgtgtgcgctagcgaaacattggaattcatgggttaaatccatgaaagaaatggattcg
cagctgagagagaaaagcattcacctattggcctttattagccgaggaactcaacgccat
ggagaggcttccagcaggggtgcccctcttttatgtcctcctaccctcaaggaggacttt
gattgctgcaagaaagcatctgtcatcaaaagtagaagtggatggtttgctctttcacct
cttggttgtgtgtcaaaacataagttcactgctgtctcaactgctgtaacaatcaaggat
caagcaaatgagaataatgatgtttctcaaacatacttctcagacgctattgccttaaag
atctacagaattgcatttcttattttgaaatttctgtgtttacaagctgagggtgctgcc
aaaagggcagaggagttggggtttgttgatcttgctcattttcctgagctaccaatgcct
gaaattttacatggtttacaggatcaggtcgctgctattgttacggagctgtgtgaggcc
aacaagtcggagcggattcattccaaaatccaaaatgtctgctgcttattgctgcagata
atggagatggccttatatttggaactgtgtgttctacagatttgtggcataagacctgta
ctggggcgtgttgaagatttctcaaaggaactaaaattgttaataagagcaacagacagc
catgcttttctgaaagcgtcaatgaagtccttgaaacttataatattatcagtctatcca
ggcttgttacaatccgagggtttcttgtga
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