Juglans regia (English walnut): 109007124
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Entry
109007124 CDS
T05245
Name
(RefSeq) transcription initiation factor IIF subunit alpha-like isoform X1
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
jre
Juglans regia (English walnut)
Pathway
jre03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
109007124
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
jre03021
]
109007124
Transcription machinery [BR:
jre03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
109007124
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TFIIF_alpha
WHD_SOWAH
zf-C3HC4_3
Motif
Other DBs
NCBI-GeneID:
109007124
NCBI-ProteinID:
XP_018842213
UniProt:
A0A2I4GE87
LinkDB
All DBs
Position
3:complement(9529646..9536806)
Genome browser
AA seq
538 aa
AA seq
DB search
MSFDLLLKPSCSGCGSTTDLYGSNCKHMTLCLSCGKTKAENHEKCYDCGATVTRLIREYN
VRASSSSDKNYFIGRFVSGLPNFSKKRSAENKWSLQKEGLQGRQLTDTLREKYKNKPWLL
EDETGQFQFQGQMEGAPSATYYLLMMQGKEFAAIPAGSWYNFNKVAQYKQLTLEEAEEKM
NNRKRTADGYERWMMKAANNGSAAFGGVERPDDKDSGVAGGRARKKMTGDDEEGNVSDKG
EEDEEEEVARKNRLGLNKRGGDDDEEGPRGGDLDLDDDDIEKGDDWEHEEIFTDDDEAVG
NDPEEREELAPEVPAPPEIKQDEDDEDEDNGEEGGLSKSGKELKKLLGRTGGLNDSDAED
DDDDEEDMDDEIGVTPVLAPKQKDAPKEEPAENSPVKTIPSGPARGTPSASKSAKAKRKL
NGDDAKVSNAAPPKKVKTENELKPSLKEETVPPPKSSVPSKATPSSKTGPTSSAGPVTEE
EIRAVLIQKTPVTTQDLVANFKARLRSPEDKKAFADILRKISKIQRTNGSNYVVLRER
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttcgatctgctgttgaagccgtcgtgtagtgggtgtggatcgaccacggacttg
tacggaagcaattgcaagcacatgactctgtgcttgagctgtggcaaaaccaaggccgag
aaccatgaaaaatgctacgactgtggcgccacagtcacgcgtttgattcgagagtataat
gttcgtgcgagttctagcagcgacaagaattactttattggtagatttgtgtctgggttg
ccaaatttttcgaagaagagaagtgcagaaaataaatggtctctccaaaaagaaggtcta
caaggacggcaacttactgatactttgcgggagaagtacaagaataaaccatggttattg
gaggatgaaacagggcaatttcagttccaaggtcagatggaaggtgcaccatccgctact
tactacctactaatgatgcaaggaaaggagtttgctgctattcctgctggttcttggtat
aactttaacaaagttgcacaatataagcaacttacactggaggaagcagaagaaaagatg
aataaccggaaaaggactgctgatggatatgaaagatggatgatgaaagctgcaaataat
ggatctgctgcatttggtggagtggagaggcctgatgacaaagatagtggtgtggctggt
ggtagggcacgtaaaaagatgactggtgatgatgaagaaggtaatgtttcagataaaggg
gaggaggatgaagaggaagaggtcgcaaggaagaatagattgggactcaacaaaagaggt
ggtgatgatgacgaggaaggtccgagaggtggtgatcttgatttagatgatgatgatatt
gagaagggtgatgattgggagcatgaagaaatattcacggatgatgatgaagccgttggt
aatgatcctgaagaaagggaagaattggcccctgaagttcctgctcctccagaaattaag
caggatgaagatgatgaggatgaagataatggagaggagggtggactgagcaaatccgga
aaagagttgaagaagctgcttgggcgaactggtggacttaacgattcggatgcagaggat
gatgatgatgatgaggaagatatggatgatgagattggtgttactcctgtgctggctcca
aagcagaaggatgcacctaaagaggaacctgctgaaaacagtcctgtaaaaacgatacct
tctggacctgctcggggaaccccatctgcctctaagtctgcaaaggcgaagagaaaatta
aatggcgacgatgcgaaagtgtctaatgctgcacctccaaagaaggtgaaaacagaaaat
gaattaaaaccttctttaaaagaagaaaccgtgcctcctcctaaaagcagtgtgccttca
aaagctacaccatcatcaaaaactgggccaacatcatctgctgggcctgtcactgaagaa
gaaatcagagctgttttaatacagaagacacccgtgacaacacaggatcttgttgctaat
tttaaagctagactaagatccccagaggacaagaaagcttttgcagacatcctgagaaaa
atttccaagatacagaggacaaatggatctaattatgttgttttgagagagcgatga
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