Juglans regia (English walnut): 109007239
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Entry
109007239 CDS
T05245
Name
(RefSeq) zinc finger CCCH domain-containing protein 41
KO
K13192
RNA-binding protein 26
Organism
jre
Juglans regia (English walnut)
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
jre01009
]
109007239
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jre03019
]
109007239
03041 Spliceosome [BR:
jre03041
]
109007239
Protein phosphatases and associated proteins [BR:
jre01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
109007239
Messenger RNA biogenesis [BR:
jre03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
109007239
Spliceosome [BR:
jre03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
109007239
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Nup35_RRM_2
RRM_Nup35
zf_CCCH_4
zf-CCCH
OmpH
Motif
Other DBs
NCBI-GeneID:
109007239
NCBI-ProteinID:
XP_018842380
UniProt:
A0A2I4GER7
LinkDB
All DBs
Position
1:3517400..3527011
Genome browser
AA seq
928 aa
AA seq
DB search
MELKVSSPKPVGLSPSDCVSDPEEKEVSDDDDDDRNHKHRRRETRSQSSERDALEHVITR
PYRKRNKPYENGHPFRENESQTSEKDLSSKFERRRQGLTSRAPLDLNHRFWGNQTFSGAG
PGRGRGWDSGTWNQRDSRFSSVDIASQMVQQGSIPSNLYNGRGLPNVSNAQGASWNAFGL
ITGLPTGGLETLHSIGLQGTLRPSINSSMNMGIPRQRCRDFEERGFCLRGDMCPMEHGVN
RIVIEDVQSLSQFNLPVSLPSVHLLGTPAGTRPLQSVSASSTTLMNSKGLLNKISKPGIV
DDGLGPNGAFSGSGCVGGADLYDPDQPLWNNNCPETSNGLLTLQSPKNDETETMLDDDLS
DRHNGRSYDSADNECLVRSTGTAVGLQGTGSSVWGRIGGSKNRLDMKAKIDSSIVSSACF
ENEAKEDKGALASVQGTSRQGKRIVADDVGPKATASSPKRPSDTARNIRKPSQKALRTLF
VNGIPQKNNKREGLLSHFQKFGEVIDIYIPVNGERAFVQFSKREEAEAALKAPDAVMGNR
FIKLWWAKRDSIPDDGINSGGGVFVTPCGATAASVPYLPFLSKEKDINQSAASKSSVLHA
SDASGPVSDHPKPVIPDGPKAPPLQKKLESLEYLKEELRKKQELLDQKRNDFRRQLQKLE
EQATGPKGEVVSEQVAKRPKLEIVADTAKAATPRSSSDPGSAVASPHAEMVGDKNKSFDN
VMSHSPKISTSLMLQESMSLKQPIRPLAPVGAPFLTNRYKLDNRPTAFRILPPLPAGLVS
DAVLKEHFSSYGDISNVELEDLDASESEASKNCSACITFTTRRSAENAFVNGKCWQGHNL
KFMWLTSSNSSGGRENSPSIHKGHSEPDDQSQEQISGIIPEEVSTSENGESENPVRKSGI
EHTEMDEDSQPSASPRSGEKESTKANVC
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atggagctgaaagtttcatctccaaagccggtgggtctttctccctctgattgtgtcagt
gatcctgaggagaaggaagtcagcgatgatgatgatgatgatcgaaaccataagcatcgt
aggcgggagacgcgctcccaatcttcggaaagagatgctttggagcatgtgataacaagg
ccgtatagaaaacgcaacaaaccttacgaaaatgggcatccttttagggaaaatgaatct
caaacaagtgagaaagacctatcttcaaagtttgaaagaagacgccaaggcttaacatca
cgagcacctttggatttaaatcacagattttggggaaaccaaacattttctggagctggt
cctggtaggggacgaggctgggactctggcacttggaaccaacgtgattcaaggttcagt
tcagttgacattgcatctcaaatggttcagcagggttccattccttcaaacctgtataat
ggaagagggttgccaaatgtttcaaatgcccagggtgcatcctggaatgcatttggacta
attacaggactaccaactggtggcctagaaacacttcattccattggtttgcaaggaaca
ctcagaccatccatcaattcttcaatgaatatgggcattcctcgtcaacgctgcagagac
tttgaggagcgtggattttgtctaagaggggacatgtgccccatggagcatggtgtcaat
aggattgtcattgaagatgttcagagtctttcacagtttaaccttcctgtttcacttcca
agtgttcaccttctgggaacacctgctggaacaagacctttgcaatcagttagtgcttct
tcaaccactttgatgaacagcaagggattgcttaacaaaattagcaagcctggaatagtc
gatgatggtttggggccgaatggtgcattttctggttcaggttgtgtgggtggagctgat
ttgtatgatcctgatcaacccctgtggaataacaactgccctgaaacgtcaaatggccta
ctcactctacaatcacccaagaatgatgaaactgaaaccatgttggatgatgatctctct
gataggcacaatggcaggtcatatgacagtgctgataatgagtgccttgttagaagcacc
ggaactgctgttggcttacagggtactggttcgtctgtttggggtagaattggtggttca
aaaaatagattagacatgaaggcaaaaattgattcttcgattgtttcctcggcttgtttt
gagaatgaagctaaggaagataaaggggccttagccagtgttcaaggcacttcccgccaa
ggaaagcggatcgttgctgatgatgttggtccaaaagctacagcttcatctcccaagaga
ccgagtgatactgcgcgtaacatccggaaaccttctcaaaaggctttgcgtactctattt
gtcaatggcattccccagaaaaacaataaaagggaaggtcttctttctcattttcaaaag
tttggagaggtaattgatatttatattccagtaaatggtgaaagagcatttgtccaattc
tcaaaaagggaagaggcagaagctgctctcaaggcacctgatgctgtaatgggtaatcgc
tttatcaagctgtggtgggctaaacgtgatagcattcctgatgatggcataaacagtggt
ggtggtgtatttgtaactccttgtggtgcaacagctgcttcagttccatatctccctttt
cttagcaaagagaaagacattaatcagtctgccgcttcaaagagtagtgttctccatgct
tctgatgcctccggacctgtctctgatcaccctaagcctgtcatcccggatggccctaag
gctccacctttgcaaaagaagctggagagtttagagtatttgaaagaggagctccgcaag
aaacaagaattgctggaccagaagcggaatgactttcggcgccagttacaaaaactcgag
gaacaagctacaggtccgaagggcgaggtagtttctgaacaagttgcaaagagacctaaa
ctggaaatagtggctgatactgctaaagccgctactccaaggtcctcctctgatcctggt
tctgctgtggcgtcaccacatgccgagatggtgggggataagaacaaatcattcgataat
gtcatgtcccatagtcccaaaataagcacaagcctgatgctgcaggaatctatgagctta
aagcagccaattcgtccattagcacctgtaggggccccttttctaacgaacagatacaaa
ttggacaaccgtcctactgcatttagaattcttccacctttgccagctggacttgtgagt
gatgctgttttgaaggaacacttttcatcatatggtgatatttctaacgtggagctagaa
gatctggatgccagtgagtcagaggcatctaaaaattgctcagcttgtataactttcacc
acacgtcgatcagctgagaatgcatttgttaatggtaaatgctggcaaggccacaattta
aaatttatgtggctgacatctagtaattcttctgggggcagagaaaattctccatccatt
cataaggggcattcagaacctgatgatcagtctcaagaacaaatatcaggtataatacct
gaggaagtttctacttcagaaaatggagaatctgaaaatccagtaagaaaaagtggtatt
gagcatacggagatggatgaagattcccagcctagtgcaagcccaaggtccggtgagaaa
gagtcgactaaagccaatgtctgttga
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