Juglans regia (English walnut): 109007427
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Entry
109007427 CDS
T05245
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 1-like
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
jre
Juglans regia (English walnut)
Pathway
jre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109007427
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jre03019
]
109007427
Enzymes [BR:
jre01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
109007427
Messenger RNA biogenesis [BR:
jre03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109007427
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
109007427
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
zf-C6H2
Motif
Other DBs
NCBI-GeneID:
109007427
NCBI-ProteinID:
XP_018842646
UniProt:
A0A2I4GFH0
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Position
8:complement(4711050..4721739)
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AA seq
573 aa
AA seq
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MGPQESSETTELEVSVSLPSKTPVIDCEINPFIDVKSPGSQIVPVPHSLACNWYREQFTC
SVHHGKLSTFQCVSCVELDLPPKESYHCSSRCFLDSWKIHRVRHHNAAEAVCRNLTGNKQ
SVRELRSSGSWPAFGDASLLHQSAMVVEREGKEWIKVGSSKAYVPTMDDVGLRLRLESAA
VDCSQGIHLSPVNMIVTDPVITPPSAPHRHMVQIRHLQKSSDDVVFTVLSYNVLSDLYAT
GKIYDYCPAWALLWGYRRQNLLREIIKYGADILCLQEVQSDHFENFFEPQLAKCGYSAVY
KEKTQRVYTGKRYVSDWCATFYRRDLFKEIKKYEIEFRKTALSVVEALKPEDRNSARIHL
AKDNIALVVVLEKMQKGSTTDAIQTRICVAFYHQANTHISANPKHPDVKLFQVANLVNGL
EKIAQSQIPLLLCGDINSLPQSDPHTFIVSGRINRTRAREDDSNGIYQHLKLYHSLCLLS
AYASSCQSDLGTKEPVFTHVTRDFCGTLDYIFYTATDMILEGLLELPYLESTEPSLPSPI
WSSDHIALMARFRLKRPSRWRPDPLPLPLNPWQ
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
atgggtccccaagaatcatccgagaccacggagctcgaagtgtcggtgagtctgccttcg
aaaactccagtcatcgactgcgagatcaatccgttcatagatgtcaagagcccagggtct
caaatagtcccagtaccgcattcactggcttgcaactggtaccgcgaacagtttacttgt
tctgtccaccatggtaagttgagtacctttcagtgcgtgtcctgtgtagaattggattta
ccacccaaggagagttatcattgctcttcaaggtgtttcttagattcgtggaaaatacat
agggtgcgtcatcacaatgcagctgaagctgtctgtagaaatttaactggcaataaacaa
tcagttagagagctcaggagttctggttcttggcctgccttcggtgatgcctcattactt
catcagagtgcaatggtggtagaacgagaaggcaaagaatggattaaggtgggatcctca
aaagcttatgtacccacaatggatgatgttggtttaagattgaggctggaatctgcagct
gtagactgttcgcagggtattcatttgtctccagttaatatgatagtgactgatcctgtg
attactcctccatctgctcctcatcgtcatatggtccaaattagacatctgcagaaatct
tctgatgatgtagtgtttactgtgctatcctataatgtcctttctgatctgtatgctacc
ggaaagatctatgattactgcccagcatgggctcttttatggggctaccgtcgacagaat
ttgctccgtgagattattaaatatggtgcagatatcctttgtcttcaagaggtgcagagt
gatcattttgaaaatttctttgagcctcagctggcaaaatgtgggtactcagctgtgtac
aaggaaaagacccaaagggtttatacaggcaaacggtatgtaagtgattggtgcgcaaca
ttctaccgtagggatctattcaaagaaattaagaaatatgagattgagtttagaaaaaca
gcattgtcagtggttgaagctttgaagcctgaagacagaaattccgcccgcatccacctg
gcaaaggacaatattgcacttgtcgttgtattagaaaaaatgcaaaaaggcagcaccact
gatgccattcaaactcgcatttgtgtggccttttatcatcaggcaaacacccacatatct
gcaaatccaaaacatccagatgtaaaattatttcaggttgcaaaccttgtaaatggactt
gagaaaattgcccagtcacaaattcctctactattgtgtggggatatcaactctcttcct
caaagtgatcctcataccttcatagtcagtggcagaattaaccgtactcgtgcaagggag
gatgattcaaatggtatatatcagcatctcaagctttatcattcattgtgtctgttaagt
gcatatgcatcctcctgtcagtcagatctcggaaccaaggagccggtattcactcacgtt
acgcgagatttctgtggaaccttagattacatattctacacagcgacggatatgattctt
gaaggtttgttggaacttccgtaccttgaaagcactgaacctagccttccatcacctatt
tggtcttcagatcatattgctctcatggcaagattcagactcaaacgaccttcccgctgg
agaccagacccactacctcttcctctaaacccgtggcagtaa
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