KEGG   Juglans regia (English walnut): 109007528
Entry
109007528         CDS       T05245                                 
Name
(RefSeq) protein TRANSPARENT TESTA GLABRA 1
  KO
K11805  DDB1- and CUL4-associated factor 7
Organism
jre  Juglans regia (English walnut)
Pathway
jre03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:jre00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    109007528
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:jre04121]
    109007528
   03036 Chromosome and associated proteins [BR:jre03036]
    109007528
Ubiquitin system [BR:jre04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     109007528
Chromosome and associated proteins [BR:jre03036]
 Eukaryotic type
  Histone modification proteins
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.3/1.5)
     109007528
SSDB
Motif
Pfam: Beta-prop_THOC3 WD40_CDC20-Fz Beta-prop_WDR5 WD40_Prp19 Beta-prop_WDR3_1st WD40 Beta-prop_CAF1B_HIR1 WD40_WDHD1_1st Beta-prop_RIG_2nd WD40_Gbeta Beta-prop_EIPR1 Beta-prop_TEP1_2nd Beta-prop_EML_2 Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_2nd WDR55 WD40_MABP1-WDR62_2nd Beta-prop_WDR41 Beta-prop_Aladin MIOS_WD40 EIF3I Beta-prop_WDR36-Utp21_1st ANAPC4_WD40 Beta-prop_WDR90_POC16_2nd Beta-prop_IFT140_1st WD40_RFWD3 Beta-prop_Vps41 Beta-prop_WDR19_1st
Other DBs
NCBI-GeneID: 109007528
NCBI-ProteinID: XP_018842764
UniProt: A0A2I4GFT8 A0A833WTB6
LinkDB
Position
16:6074580..6078430
AA seq 330 aa
MEHSSQESLMKHSNSITYESPYPLYSLAISHSPYRVAIGSFLETYNNRVDILSFDPDALT
LKPHLPSLSFDHPYPPTKLMFHPSNPNLLASSGDFLRLWDLRDHSVEPLSVLNNSKSSEF
CAPLTSFDWNDIEPRRVGTSSIDTTCTIWDVDKGVVETQLIAHDKEVYDIAWGEARVFAS
VSADGSVRIFDLRDKEHSTIIYESPLPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIR
SPTIPVAELERHAASVNAISWAPQSSRHICSAGDDTQALIWELPTVAGPNGIDPMSVYSA
GSEINQLQWSAAVPDWIAIAFSNKMQLLKV
NT seq 993 nt   +upstreamnt  +downstreamnt
atggagcattcgagccaagagtccctgatgaaacactcgaattccataacctacgaatcc
ccttacccactgtactccttggccatctcccactccccctatcgcgttgccatcggcagc
ttccttgagacctacaacaatcgcgtcgatattctttctttcgacccggacgccttgacc
ctcaagccccacctcccttctctctcattcgatcatccctatccgcccaccaagctcatg
ttccacccctccaaccctaacctcctcgcctcctccggcgacttcctccgcctctgggac
ctccgtgaccactccgtcgagcccctctcagttctcaacaacagcaagtcctccgagttt
tgcgccccgctcacctccttcgactggaacgacatcgaacccaggcgtgtcggcacctcc
agcattgacaccacctgcaccatctgggacgtcgacaagggcgtcgttgagacccagctc
atcgcccacgacaaggaggtatacgacatcgcttggggggaggctagggttttcgcctcc
gtctccgccgacggatcggtccggatcttcgatctccgggacaaggagcactccaccata
atctacgagagccctctgcccgatacgccacttctgaggctggcctggaataagcaggac
ctgaggtatatggcgacgattctgatggacagcaacaaggtcgtgattttggatatacgg
tcgccgacgatcccggtggcagagcttgagaggcatgcagctagcgtgaatgcaatctct
tgggcgccccagagttccaggcatatatgctcggcgggggatgatactcaggccctcatt
tgggagctgcccacggtagctggccccaatggaatcgatccgatgtccgtatactcggct
gggtcggagattaaccagctgcagtggtcggcggcggtgcctgattggattgccatcgcg
ttttccaacaaaatgcagctcttgaaagtttga

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