Juglans regia (English walnut): 109007727
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Entry
109007727 CDS
T05245
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH12
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
jre
Juglans regia (English walnut)
Pathway
jre03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109007727
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
jre03041
]
109007727
Enzymes [BR:
jre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109007727
Spliceosome [BR:
jre03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
109007727
Complex C
U5 SnRNP specific factors
109007727
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
Motif
Other DBs
NCBI-GeneID:
109007727
NCBI-ProteinID:
XP_035551591
UniProt:
A0A6P9EWG0
LinkDB
All DBs
Position
11:27042094..27049924
Genome browser
AA seq
2176 aa
AA seq
DB search
MAHLGGGAEAHARHKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPRSFGDRAF
RGKPPELDEKLQKAKRKKKERDPLAEPAPGRQSKRRRLQEESVLTSSEEGVYQPKTKETR
AAYEAMLSVIQQQLGGQPLSIVSGAADEILAVLKNDILKNPDKKKEIEKLLNPIPNPVFD
QLVSIGRLITDYQDGGDASGPAAANGDDALDDDVGVAVEFEENEEEDEESDLDMVQEDED
DDDDVVEANGAGAMQMGGGIDDDDDMRDANESMSLNALSIGAYWLQGKISEAFEKQIDPQ
QCQKLAEDVLKILAEGDDREVESKLLVLLQFDKFSLIKFLLRNRLKIVWCTRLARAEDDD
QKKKIEEEMMGLGPELAAIVDQLHATRASAKERQKNLEKSIREEARRLKDESGGDGDRGR
RGPVDRDADSGWGQRQLLDLDSIAFEQGGRLVAAKKIELPDGSYRHSSKGYEEIHVPALK
PKPFDPKEKLVKISDMPDWAQPAFKGMKELNRVQSKVYETALFKADNILLCAPTGAGKTN
VAVLTILQQIALNRNSDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQYFDVKVRELSG
DQSLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESI
VARTVRQIESSREHIRLVGLSATLPNYEDVALFLRVDLHQGLFHFDNSYRPVPLSQQYIG
ITVKKPLQRFQLMNDVCYEKVMAIAGKHQVLIFVHSRKETAKTARAIRDAALANDTLGRF
LKEDSASREILHTHTDLVKSNELKDLLPYGFAIHHAGLARADRQLVEELFADGHVQVLVS
TATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDVMQMLGRAGRPQFDSYGEGIIIT
GHSELQYYLSLMNQQLPIESQFVSKLPDQLNAEIVLGTVQNAREASNWIGYTYLYVRMVR
NPTLYGLPADVLTRDITLEERRADLIHSAATILDKNNLVKYDRKSGYFQVTDLGRIASYY
YITHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPIKES
LEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLMRALFEIVLKRGWAQLAEKA
LNLCKMINKRMWSVQTPLRQFNGIPNDTLMKLEKKDLAWDRYYDLSSQEIGELIRVPKMG
RTLHKFIHQFPKLNLAAHVQPITRTVLRVELTITPDFQWEDKVHGYVEPFWVIVEDNDGE
YVLHHEYFMLKKQYIDEDHTLNFTVPIYEPLPPQYFIRVVSDRWLGSQTVLPVSFRHLIL
PEKYPPPTELLDLQPLPVTALRNPSYEALYSFKHFNPVQTQVFTVLYNTDDNVLVAAPTG
SGKTICAEFAILRNHQKGPESVMRVVYIAPLEALAKERYRDWERKFGKDGIKMRVVELTG
EATTDLKLLEKGQIIISTPEKWDALSRRWKQRKPVQQVSLFIVDELHLIGGQGGPVLEVI
VSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEVHIQGV
DIANFEARMQAMTKPTYTAIVQLAKNEKPALVFVPTRKHVRLTAVDLMTYSDGDGEKKPF
LLQTPDKLDPYIDRVNDEMLKATLRHGVGYLHEGLTDRDRDIVSYLFGIGGIKVCVMSSS
MCWGVSLSAHLVVVMGTQYYDGRENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAP
RKEYYKKFLYEAFPVESHLHHFLHDNLNAEIVAKIIENKQDAVDYLTWTFMYRRLTQNPN
YYNLQGVSHRHLSDHLSELVENTLSNLEASKCVIIEDDMDLTPSNLGMIASYYYISYTTI
ERFSSSLTSKTKMKGLLEILSSATEYALLPVRPGEEDVVRRLINHQRFSFENPKCTDPHV
KANALLQAHFARQTVGGNLASDQREVLLSASRLLQAMVDVISSNGWLSLALLAMEISQMV
TQGMWERDSMLLQLPHFTKELAKKCQENPGKSIETVFDLVEMEDDERRELLQMSDDQLLH
IAQFCNRFPNIDMTYEVLDNDSVRAGREMTLLVTLERDMEGRTEVGPVDAPRYPKAKDEG
WWLVVGDTKTNQLLAIKRVSLQRKSKVKLDFAPAEAGKKTYTLYFMCDSYLGCDQEYTFT
VNVREAAGPDEDSGEE
NT seq
6531 nt
NT seq
+upstream
nt +downstream
nt
atggcgcatctgggcggaggtgcggaagcacacgccaggcacaagcagtacgagtatcga
gctaactccagtctggtcttgaccaccgactctcgcccacgggacacccatgagcccact
ggcgagcccgaatcgctatggggaaagatcgaccccagaagtttcggcgatagggccttc
cgtgggaaacctcccgaattggacgagaagcttcagaaagccaagaggaagaagaaggaa
cgcgacccacttgccgagcccgcacccggtcgccagagcaagcggcgccgccttcaagaa
gaaagcgtcttgacttcttccgaggaaggtgtgtaccagcctaagactaaagagacgagg
gctgcgtatgaggctatgcttagtgtcattcagcaacagttgggtggccagcctctcagt
attgtcagtggcgccgcagatgagatcttggcggtccttaagaatgatatactgaagaat
ccggacaagaaaaaggagattgagaagctattgaacccgattccaaaccctgtttttgat
cagttggtatcaatagggaggcttatcacggattaccaggatgggggtgatgcctctggg
cctgctgctgcaaatggggatgatgctctcgatgacgatgtgggtgttgcagttgagttt
gaagagaatgaggaggaggatgaggagagtgatcttgatatggtccaggaagatgaggat
gatgatgacgacgtggtggaagcaaatggtgctggagctatgcaaatggggggtgggatt
gacgatgacgatgacatgcgagatgcaaatgagagtatgagccttaatgctctgagcatt
ggcgcttattggcttcaggggaagatatctgaagcatttgagaaacagattgatccacaa
cagtgccagaagcttgcagaagacgtgcttaagatactcgccgaaggtgatgacagagaa
gttgaatcaaagctgttggtgcttctccaattcgataaatttagccttattaagtttttg
ttgaggaatcgactgaagattgtttggtgtacccgcttggcgagggccgaagatgacgat
cagaagaaaaagattgaggaggaaatgatgggtttgggtccagaactggcggctattgtg
gatcagttgcatgccacgagggctagtgcaaaagaaaggcaaaagaatttggagaagagt
attagagaagaggctcgtcggttgaaggatgagagcggtggagatggggacagaggtagg
cgaggtcctgttgatagagatgcagacagtggttggggccagcgccagttgcttgatctt
gacagtatagcttttgaacaaggtggtcgtttggtggcggcaaaaaagattgagcttcca
gatgggtcttataggcattctagcaagggatatgaagaaattcatgtgcctgcattgaag
cccaaaccatttgatccaaaagagaaactggtaaaaatatctgatatgccagactgggca
caaccggcttttaaaggaatgaaagagttgaacagggtacagagtaaagtatatgagact
gcactttttaaagctgacaatatcctcttatgcgctccaactggggcagggaaaactaac
gttgccgtgctaactatacttcagcagatagcattaaacaggaattcagatggttcattt
aaccacagcaattataagattgtatatgttgctcctatgaaagctctagttgctgaagtt
gttggaaatttgtccaatcgtttgcagtacttcgatgtcaaggtcagggagttaagtgga
gatcagtcactgactcgccagcaaattgaagaaactcaaattatagtcacaactccagag
aagtgggatatcattaccaggaagtctggcgatcggacttatacgcagcttgtgaagctt
ctcatcattgatgagattcatcttcttcatgataacagaggacctgtgcttgaaagtatt
gttgctagaacagttaggcagattgaaagttcaagagagcatattcggttggtagggtta
tctgctacactccctaattatgaggatgtggctttgttcttacgagttgatctgcaccaa
ggattattccactttgacaatagttacagacccgtccctctttctcaacagtatattgga
atcacggtaaagaagccactccagaggttccagctgatgaatgacgtctgttacgaaaag
gtaatggctatagcaggaaagcatcaagtccttatttttgttcactcaagaaaagaaaca
gccaaaacagctcgtgccataagagatgctgctcttgctaatgatactctggggagattt
ttgaaggaggacagtgcaagccgggagattctccatactcatacagatctggtcaagagc
aatgaacttaaagatcttctaccatatggttttgctattcatcatgccgggttggcaagg
gctgaccgccagctcgttgaggagctatttgctgatggacatgtgcaagtgttggtatcc
actgcaactcttgcttggggtgtgaatttacctgctcacacagtcattatcaaggggacc
caaatatacaatcctgaaaagggtgcatggaccgaactgtcccctctggatgttatgcag
atgctgggtcgtgcaggaaggccccagtttgattcatatggggagggcataatcattact
ggtcatagtgaactacaatattatctttctttaatgaatcagcagcttcctattgaaagc
cagtttgtgtccaaactgcctgatcaattgaatgcagaaattgttcttggaactgttcaa
aatgctagagaagcctccaattggattgggtacacttacttgtatgttcgtatggtgcgc
aaccctacactgtatggtttaccagccgatgttctcacgagagatataactttggaggag
aggagggctgatttgattcattctgctgcaaccatactggacaaaaataatttggttaaa
tatgatagaaaaagtggatattttcaagtcacagacttgggtcgcattgctagctactat
tatataactcatgggacgatatccacctataatgagcatttgaagcccactatgggagat
attgagctttgtcggttgttttcactcagtgaagaattcaaatatgttacagtgcggcag
gatgaaaaaatggaactagcaaagcttttggatcgtgttcctattcccatcaaggaaagc
ttggaagagcctagcgccaagatcaatgttttgctacaggcatacatttcacagttgaag
cttgaaggtctttcattaacgtctgacatggtgttcataactcagagtgcgggacgtctt
atgcgagctctttttgagattgtgttgaaacgtggatgggcccaattggctgagaaggct
ttgaacttgtgcaaaatgattaacaagaggatgtggagtgtacaaacacctcttcgccaa
ttcaatgggatcccaaatgatactttgatgaagttagagaagaaggatttggcctgggat
aggtattatgacctttcatctcaggagataggggagcttattcgtgtcccaaagatggga
aggacacttcataaatttattcaccaattccccaaacttaaccttgcagcacatgtgcag
ccaattacccgcactgttttgagggttgagctcaccataacgccagactttcaatgggag
gacaaagttcatggatacgtcgagccattttgggtgattgtggaggataatgatggtgaa
tatgttcttcatcatgaatattttatgttgaagaagcagtatatcgacgaggatcacact
ttgaatttcacagtgccaatttatgagccattgcctcctcagtacttcatccgtgttgtg
tcagatagatggcttgggtcacaaactgttttacccgtttctttcaggcacctcatttta
ccagaaaagtatcctccgccaacagagctattggacttgcaaccactgcctgtgactgcc
ttaaggaatccatcatatgaagctctttatagttttaagcattttaatcctgttcagact
caggtattcactgtcctgtataatacagatgacaatgttttagttgctgccccaacaggg
agtgggaagaccatatgtgcggagttcgcgatcttaaggaatcatcaaaaaggacccgag
agtgtcatgcgtgttgtgtatattgcaccccttgaagcactggccaaggaacggtatcgt
gattgggagaggaagtttggaaaggatggtattaaaatgcgggtggttgaattaacaggg
gaagcaactacagatttgaaacttcttgagaaaggtcagataattatcagtactccggag
aaatgggatgctttgtctcgccgctggaaacagaggaaacctgttcaacaagttagcctt
ttcatcgttgatgaactccacttgattgggggtcaaggtggtcctgtcttggaggtgatt
gtttccaggatgaggtatattgcaagtcaagttgagaacaagattcgaattgtggccctg
tcaacttcacttgcaaatgcaaaggatcttggggaatggataggtgctacctctcatggc
cttttcaattttcctcctggcgtacgtccagtaccattggaagtacacatccagggggta
gacatagctaattttgaagcgaggatgcaagcgatgacaaaaccaacatatactgcaatt
gttcagcttgccaagaatgagaagcctgctcttgtttttgttccaacaaggaagcatgtc
cgactcactgctgtggatctgatgacctactccgatggggatggagagaagaagccattt
ttattgcagacccctgacaaacttgatccttacattgacagagttaacgatgaaatgctt
aaagccactttacgtcatggagtgggttacttgcacgagggcttaactgatagggatcga
gacattgtgtcatatctgtttggcattgggggtattaaggtttgtgtcatgagcagctca
atgtgttggggagtgtcactgtcagcccatttggtggtcgtgatgggaacacaatattat
gatggtcgggaaaatgctcacactgattacccagttactgatctgctacaaatgatgggt
catgctagtcgacctttgttagataactctgggaagtgtgtcatcctttgccatgcacct
cgtaaagaatactacaagaagttcttgtacgaagcattcccggttgaaagccatttacac
cactttctacacgataatctgaatgcagaaattgtcgcaaaaatcattgagaacaagcaa
gatgctgtggattatcttacgtggacgtttatgtacaggaggctcacacaaaatccgaac
tattacaatcttcagggagttagtcacaggcatctttctgatcacctgtcagagcttgta
gagaacacattgagcaatttagaagcaagtaaatgtgttatcattgaggatgatatggat
cttactccttcgaatcttgggatgatagcatcctattattacatcagttacactactata
gagcgtttcagttcttctttgacttccaagaccaaaatgaagggtcttctggagattttg
tcttcggctacagaatatgcactccttcctgtacgacctggggaggaagatgtggttcgg
aggttgattaatcaccagaggttttcatttgaaaatcccaagtgcacggacccgcatgtg
aaagcaaatgcacttcttcaggcccactttgcaaggcaaactgtcggtgggaacctagca
tcggaccagcgagaggtgcttctttccgcaagtagattgcttcaggcaatggttgatgtt
atttcaagcaatggctggctgagccttgctctcctcgcaatggaaatcagccaaatggtg
acacagggcatgtgggaacgtgattccatgcttctacaactcccacactttacaaaggag
ttggccaagaaatgccaagaaaaccccggaaagagtatagagactgtatttgatttagtg
gagatggaggatgacgagaggcgtgagctattgcagatgtcagatgatcagttgctgcac
attgcacagttctgcaaccgtttccccaatattgatatgacatacgaggtgctggacaac
gatagtgtgagggctgggagggagatgacgctgctggtcactcttgagagagatatggag
ggaaggacagaggtaggacctgttgatgctcccaggtatcccaaggccaaagacgaaggg
tggtggcttgtcgtgggcgataccaaaaccaaccagttgcttgccatcaagagggtttcc
ttgcaaagaaaatcgaaggttaagcttgatttcgcccctgcagaagctggaaagaagaca
tacacactctatttcatgtgtgattcatatctgggatgtgaccaagagtataccttcacc
gtcaatgtcagagaagcagcaggtcctgatgaagatagcggggaagaataa
DBGET
integrated database retrieval system
