Juglans regia (English walnut): 109007771
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Entry
109007771 CDS
T05245
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
jre
Juglans regia (English walnut)
Pathway
jre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109007771
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jre03019
]
109007771
03012 Translation factors [BR:
jre03012
]
109007771
Enzymes [BR:
jre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109007771
Messenger RNA biogenesis [BR:
jre03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
109007771
Translation factors [BR:
jre03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
109007771
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
AAA_19
Dicer_dimer
nSTAND3
T2SSE
NACHT
ATPase
Motif
Other DBs
NCBI-GeneID:
109007771
NCBI-ProteinID:
XP_018843150
UniProt:
A0A2I4GGX5
LinkDB
All DBs
Position
13:37357233..37378389
Genome browser
AA seq
1205 aa
AA seq
DB search
MLSYSLLQAPPFPPPQFSSTSLIRALKPSLFPPFLSMKDRPPSSYGAVYVPPHHRLRSVI
TSPNHTSAALIDSKLREAQSAVLNPRAGALPHFQAQNHQQQEQLHKGNSQNNSACDDMVS
EEDSDREFESFSQPGASHSNNVDDWRRKLTMFLHDKEKQELVSREKKDRHDFEHISALAS
RMGLYSHLYAKVVVFSKVPLPNYRFDLDDKRPQREVTLPLGLLRRVDSYLGEYLSQKSKT
RENFPDLSFSRSSSSCSIATDEGLFEQPEPLAASKAVMEKIIWRRSLLLRDQQQAWQESS
EGRKMLEFRQSLPAYKEKDALLTAISQNQVIIVSGETGCGKTTQIPQFILESEIESIRGA
ACSIICTQPRRISAMSVSERVATERGQKLGESVGYKVRLEGMKGRDTHLLFCTTGILLRR
LLVDRNLKGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSATLDAELFSSYF
VGAQIMHIPGFTYPVRTHFLENILEMTGYRLTPYNQIDDYGQEKMWKMGKQAPRKRKSQI
ASVVEDALKAADFKEYSHQTRESLSCWSPDCIGFNLIEYILCNICENEKPGAILVFMTGW
DDISSLRDKLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDEPDDGVRKIVLATNIAETS
ITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKVSAQQRRGRAGRVQPGECYHLYPR
CVYDAFAEYQLPEILRTPLQSLCLQIKSLKLGSISEFLSRALQSPELLAVQNAIEYLKII
GALDEKENLTVLGRYLTMLPMEPKLGKMLILGAIFNCLDPVLTIVAGLSVRDPFLTPFDK
KDLAEAAKSQFSRDYSDHLALVRAYEGWKDAEIDNSGYEYCWRNFLSVQSMKAIDSLRKE
FFSLLKDTGLVDGNTASYNAWSHDDYLIRAVICYGLYPGICSVVNNEKSFSLKTMEDGQV
LLYSNSVNARESKIPYPWLVFNEKIKVNSVFLRDSTAVSDSVLLLFGGGISRGDIDGHFK
MLGGYLEFFMNPSIADMYLSLREELDELIQNKLLYPRMDIHTHHELLSAVRLLVSEDGSD
GRFVFGRQVLKSSKTSVTATKPTLVSRIESGPGGDNSKSQLQTLITRAGYAAPTYKTKQL
KNNQFRATVEFNGMQIMGQPCNNKKSAEKDAAAEALQWLMGGNQAGNEYINHMSMLLKKS
KKDHG
NT seq
3618 nt
NT seq
+upstream
nt +downstream
nt
atgctctcctattctctcctccaagctcctcctttccctcccccacaattctcttccact
tcgctcatcagagcccttaaaccttcactctttcctccattcctctcaatgaaggaccgg
cctccgtcctcctacggcgccgtttacgtccctccccaccaccgcttacgctccgtcatc
acttccccgaatcacacctccgcggctctcatagactccaagctccgcgaagcccaaagc
gcggttctaaaccctagagccggtgctctgcctcactttcaagcccagaatcatcagcag
caggaacagctccacaaggggaattctcagaacaactcggcgtgcgatgatatggtctcc
gaggaagactcagatcgcgagttcgagtcattttcacagccgggtgcttcccactctaat
aacgtcgatgattggagacgaaagttaacaatgtttttacatgacaaggagaagcaagag
ttggtctcaagggagaaaaaggatagacatgattttgaacatatatcagctttggcaagc
agaatggggctttacagccatctgtatgcaaaagttgttgtctttagtaaggtcccgctg
ccgaactacagatttgatctggatgacaaacgtccgcagagggaggtgaccttgcctctt
gggttgctgagaagagttgattcctacttaggagaatacctctctcaaaagtctaagact
agagaaaactttccagatctatcattttcgagatcgagcagtagctgtagtattgccact
gatgaagggctttttgagcaacctgagccactggcagcgagtaaggctgttatggagaaa
attatttggcggagaagtttactactgcgggatcagcaacaagcttggcaggaatcttct
gaaggtagaaaaatgctggaatttcgtcagagtctccctgcttataaagaaaaggatgca
ttgctgacagctatttcacaaaatcaggttataattgtttcaggcgagactggctgtggc
aagaccacacaaattccccaatttattttagagtcagagatagaatctattcgtggagct
gcttgtagcattatatgtacacagccacgacgaatatctgctatgtccgtttctgaaaga
gttgctacagagaggggacagaaattgggtgaatctgtgggatataaagttcggttggaa
ggtatgaaagggagggacacccaccttctcttttgcaccactggcattttgttgagaaga
ttgcttgttgatagaaacttgaaaggtgtaactcatgttattgtggatgaaattcatgaa
cgtggaatgaatgaagattttcttcttattgtcctaaaagaactccttcctcgtcgacca
gaacttaggctaattctgatgagtgcaacccttgatgctgagcttttctcgtcctacttt
gttggggctcagataatgcacatcccaggttttacatatcctgttcgaactcatttcctg
gagaatattttggaaatgacgggttacagattgaccccttacaaccaaattgatgattat
ggtcaagaaaagatgtggaaaatgggcaaacaagcaccaagaaagaggaagagccaaata
gcttccgtggttgaggatgctctcaaagcagccgattttaaggagtacagccaccagact
cgggaatctttgtcatgttggagtcctgattgtattgggtttaatctaatagagtatatt
ctatgcaacatatgtgaaaatgagaagcccggtgctatcctagtttttatgactggctgg
gatgacataagttctctcagagataagctgcaagctcatccacttttaggagatccaagc
cgggttttgttgctagcatgccatgggtctatggccagttcagagcagaggctaatattt
gatgagcctgacgatggagtgaggaaaatagtgcttgctactaatattgctgagacaagt
attactattaacgacgttgtgtttgttattgactgcggaaaagctaaagagacatcttat
gacgcactgaacaacactccttgtttgcttccttcctggatttccaaggtttctgctcaa
caaagaagaggaagagctggtcgtgttcaacctggagagtgttaccacctctatcctaga
tgtgtctatgacgcttttgcagagtatcaattaccagaaattttaaggacgcctttgcag
tctctttgtctgcaaataaaaagtttgaaacttggaagcatctctgagtttctgtctagg
gctttgcaatcaccagaattactagcggttcaaaatgctatcgagtatctaaaaattatc
ggcgccctggatgagaaagaaaatctgacagtcttggggcgctatttgactatgcttcca
atggagccaaaacttggcaagatgctcatcttaggtgctatcttcaattgcctggatcca
gtattgactattgttgctggccttagtgtcagagatccctttctaacaccatttgataaa
aaggatcttgcagaggctgcaaaatctcagttttcacgagattacagtgaccatcttgct
cttgttcgggcctatgagggctggaaagatgctgaaatagataactccggatatgaatac
tgctggagaaattttctatcagtgcaatcaatgaaagctattgattctcttaggaaggag
tttttctctttgctcaaggatactggcttggttgatggcaatactgcctcctacaatgct
tggagtcatgatgattatctcatccgagcagtcatttgctatggactgtatcctggaatt
tgctctgttgtgaacaatgaaaagtcattttcattgaaaactatggaggatggccaagtg
cttctgtattcgaactcagtcaatgctcgggaatctaaaattccttatccatggctagtt
ttcaatgagaagataaaagtgaattctgttttcctccgtgactcaacagctgtttctgat
tcagtgcttctcctatttggtggaggcatctcaagaggggatattgatggacactttaaa
atgctgggtggatatcttgaattcttcatgaatccttctatagcagacatgtatctaagt
ttaagggaagaacttgatgagctgattcagaacaaactactgtatcccaggatggacata
cacacccatcatgagctcctatcagctgtgcggttgctggtttcagaggacggatctgat
ggcaggtttgtatttggccgccaggtcctgaagtcctcaaagacatctgttaccgcaaca
aagcctaccttagtgtcaagaattgaaagtggacctgggggtgataattctaagagtcag
ctacaaacattgatcaccagggctggatatgctgcgcccacttacaaaactaagcaactg
aagaacaaccagttccgtgccaccgtggagtttaatggaatgcaaattatgggtcagcct
tgtaacaacaagaaaagtgcggagaaagatgctgcggctgaggctcttcagtggcttatg
ggtggaaaccaagcgggcaatgagtatataaatcatatgtcaatgttgctgaagaaaagc
aagaaggatcatggttaa
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