Juglans regia (English walnut): 109008023
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Entry
109008023 CDS
T05245
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
jre
Juglans regia (English walnut)
Pathway
jre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109008023
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jre03019
]
109008023
03012 Translation factors [BR:
jre03012
]
109008023
Enzymes [BR:
jre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109008023
Messenger RNA biogenesis [BR:
jre03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
109008023
Translation factors [BR:
jre03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
109008023
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
nSTAND3
AAA_19
T2SSE
ATPase
PhoH
Myosin_head
ABC_tran
AAA_23
Motif
Other DBs
NCBI-GeneID:
109008023
NCBI-ProteinID:
XP_035541249
UniProt:
A0A6P9E139
LinkDB
All DBs
Position
14:4147740..4163755
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AA seq
1155 aa
AA seq
DB search
MRKSKPVVGFLFGCFQTISNNQSSLSTLHGRLHRPLLSLLQLLPSSSSSISNAGLSVAKR
GLCVYAAEQFSDDEYECDFENNKASSSVANIDEWKWKLSLLLRSEKEQEIVSKDKRDRRD
YEQISNLAKRMGLYSEIYGKVVVASRVPLPNYRPDLDDKRPQREVVVPLSLQRRVEGLLQ
EHLDRVQLSAGKVADGLDDAKSNDQVENVNLDENSDSFLDGSVMEKVLQRRSLRMRNMQR
AWQESPEGKKMLGFRRSLPSFMEKERLLQAIAQNQVIVISGETGCGKTTQLPQYILESEI
ESGRGSFCSIICTQPRRISAMSVAERVSTERGEPLGETVGYKVRLEGMKGKNTHLLFCTS
GILLRRLLSDHNLNGITHVFVDEIHERGMNEDFLLIVLKDLLTRRPDLRLVLMSATLNAE
LFSGYFGGAPTIHIPGFTHPVRARFLEDVLEMTGYKLTSFNQIDDYGQEKMWKTQRQLAP
RKRKNQITTLVEDALNESSFENYSSRVRDSLASWMPDCMGFNLIEAVLCHICRKERQGAV
LVFMTGWEDISCLRDQLKAHPLLGDPNRILLITCHGSMATSEQKLIFEKPPANVRKIVLA
TNMAEASITINDVVFVVDCGKAKETSYDALNNTPCLLPSWISQASARQRRGRAGRVQPGE
CYHLYPKCVYAAFSEYQLPELLRTPLNSLCLQIKSLQVGSIGNFLSAALQPPEPLAVQNA
IDFLKMIGALDEKENLTNLGKFLSTLPVDPKLGKMLIMGAIFCCFDPVLTIVSGLSVRDP
FLLPQDKKDLAGTAKSRFSAKDYSDHMALVRAYEGWKDAEREGSAYEYCWRNFVSAQTLQ
AIHSLRKQFSFILRDAGLVDADLSINNRLSHNQSLVRAIICSGLFPGIASVVHRETSMSF
KTMDDGQVLLYANSVNARYQTIPYPWLVFGEKVKVNTVFVRDSTGVSDSILILFGGALNH
GVQAGHLKMLEGYVDFFMDPSLAECYTKLKEELDKLVKKKLEEPSLDMHKEGKYLMLAVQ
ELVSGDQCEGRFVFGRESKKPRESNDSRFTKDGTNPKSLLQTLLMRAGHSPPKYKTKHLK
TNEFRALVEFKGMQFVGKPKKNKQLAERDAAIEALAWLTHTSDNSRDEDDHSPPDVTDNM
LKLLGKRRRSKRRSG
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atgcgtaagtcgaagccagtagtgggtttccttttcggatgtttccagacaatctccaat
aatcagagctccctttcaaccttgcacggccgcctccaccgccctttgcttagtctcctc
caactcctcccttcttcttcttcttccatatctaatgcaggattatccgttgcgaagcgt
ggtctctgcgtgtacgcagcggagcagttctccgatgacgagtacgagtgcgatttcgag
aacaataaggcatcatcttcagtggccaacattgatgagtggaaatggaaactcagtctg
ctattacgtagtgaaaaggaacaagagattgtatcaaaagataagagagataggagagac
tatgagcagatctctaatcttgccaaaaggatggggctctacagtgaaatatatggaaaa
gtagtagttgcaagcagggttccccttcctaactacaggccggatttggatgataagcgg
ccacagagagaggttgttgtcccactaagcttgcaaaggagggttgagggtttactgcag
gaacaccttgatcgagtccagttaagtgcgggaaaggttgccgatggtttggatgatgct
aaatccaatgatcaggttgaaaatgtgaatctggatgagaattcagattctttcctagat
gggtcggttatggaaaaagttcttcagaggaggagtttgcgaatgcgcaatatgcaaaga
gcttggcaggaatcacctgaaggcaagaagatgctgggcttccgacggtctctaccctca
ttcatggagaaagaaaggctgctccaagcaatagcacagaatcaggtaatagtaatatct
ggggagactggatgtggaaagaccactcaacttccacaatacatactagaatcagaaata
gaatctggtcgtggatcattctgcagcataatctgtactcagcctcgaagaatatctgcc
atgtccgttgcagaaagggtgtctacagagagaggagagcctcttggtgaaactgttggc
tataaagttcgattagagggaatgaaaggaaaaaacacccatctgcttttttgtaccagt
ggtattttacttcggcggctactgagtgatcacaacctgaatggtataacccatgtcttc
gttgatgaaattcatgagcgaggcatgaatgaagattttctattgattgtgttgaaggat
cttcttacacgccgtccggatttgcgattggtcttaatgagtgccactctgaatgctgaa
ctgttctctggttattttggaggagcaccaacaattcatattcctggctttacacatcca
gtgagagcacggtttttagaagatgtactggaaatgacagggtataagttgacctctttc
aaccaaattgatgattatggccaagaaaaaatgtggaaaacacaaaggcagcttgcacca
cggaaaagaaaaaaccagattactactctagttgaggatgctcttaatgaatcaagcttt
gagaattatagctcgagggtacgagattctctagcatcttggatgcctgactgcatggga
tttaacctcattgaggcagttttatgtcatatatgtcggaaggaacggcaaggtgctgtc
ttagtattcatgactggttgggaggatattagctgtttaagagatcaactcaaagctcat
cctctattaggagatcctaacaggattctgcttataacatgccatggatcaatggcaaca
tctgaacagaaacttatatttgagaaaccacctgcaaatgtccgcaaaatagttcttgct
actaatatggccgaggcaagcattacaatcaatgatgtagtttttgtggttgattgtgga
aaagcgaaagagacttcttatgatgctttgaataatacaccttgtctgctaccttcttgg
atatcacaagcatctgcacgccaaagaagaggtagggctggacgtgtgcagccaggcgaa
tgttaccacctttaccccaaatgtgtttatgcagctttctccgaatatcaacttcctgaa
cttttgagaactcctttgaactcgctctgcttgcagattaaaagtttgcaggttggaagt
ataggaaatttcttgtcagctgctcttcagccgccagagccactggctgtacaaaatgcc
attgattttctgaaaatgattggggcactagatgagaaggaaaatctgacaaatcttgga
aagtttctgtcaacacttccagtggatcccaagcttgggaaaatgctaatcatgggtgct
atcttttgttgctttgatcctgttcttactatagtatcagggcttagtgtcagggatcct
ttcctcttgccccaagacaaaaaggatctagcagggacagcaaaatctagattttctgca
aaggattacagtgatcatatggcccttgttcgtgcctatgaaggatggaaagatgcagaa
agagaaggatctgcatatgagtattgctggaggaatttcgtctctgcccaaacacttcag
gctatacattcgcttcggaagcagtttagctttattttaagagatgctggcttggtagat
gcagatttaagtattaataatagattaagtcacaaccagtcattggttcgtgcaattata
tgttctgggctctttcctggcatagcctctgtagtgcacagagagacatccatgtctttc
aagacaatggatgatggccaggttttactctatgcgaattctgtcaatgcccgttaccag
acaattccttacccatggctagtgtttggcgaaaaagtaaaagtcaatacagttttcgta
cgtgattccactggggtatcagattcgatactgatcctttttggtggtgctcttaatcat
ggtgttcaggctgggcatttgaaaatgttggaaggttatgttgactttttcatggatcct
agtttggcggagtgctacacaaagctcaaggaagaacttgataagcttgtaaagaagaag
cttgaagagcctagccttgacatgcacaaggaggggaagtacctcatgcttgcggttcaa
gagcttgtgtcaggggaccaatgtgaagggagattcgtatttggtcgtgaaagcaagaag
cctagggagtctaatgacagcagattcacaaaagatggaacgaatcccaagagcttgcta
caaacactgttgatgagagcaggacactcccctcctaaatacaaaacgaagcaccttaag
acaaatgagtttagggctctggtagagttcaagggaatgcaatttgtagggaaacccaag
aaaaacaagcagcttgcagagagggatgctgcaatagaggcattggcctggttgacacat
acctctgacaacagtcgggatgaagacgatcactcccctcctgatgtcactgataacatg
ttgaagcttcttggaaaacggcggagatcaaagcgccgctccggttga
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