Juglans regia (English walnut): 109008437
Help
Entry
109008437 CDS
T05245
Name
(RefSeq) DNA repair protein RAD50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
jre
Juglans regia (English walnut)
Pathway
jre03440
Homologous recombination
jre03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
109008437
03450 Non-homologous end-joining
109008437
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
jre03032
]
109008437
03400 DNA repair and recombination proteins [BR:
jre03400
]
109008437
DNA replication proteins [BR:
jre03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
109008437
DNA repair and recombination proteins [BR:
jre03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
109008437
BRCA1-C complex
109008437
NHEJ (non-homologous end-joining)
MRX complex
109008437
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SMC_N
AAA_21
Rad50_zn_hook
AAA_15
SbcC_Walker_B
OVT1
AAA_29
ABC_tran
AAA_16
SAM_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
109008437
NCBI-ProteinID:
XP_018844064
UniProt:
A0A2I4GJJ6
A0A834CT69
LinkDB
All DBs
Position
7:21822820..21851494
Genome browser
AA seq
1316 aa
AA seq
DB search
MSTVDKMLIKGIRSFDPENKNVITFFKPLTLIVGPNGAGKTTIIECLKLSCTGELPPNAR
SGHSFIHDPKVAGETETKGQIKLRFKTAAGKDVVCIRSFQLTQKASKMEYKAIESVLQTI
NPHTGEKVCLSYRCADMDREIPALMGVSKAVLENVIFVHQDEANWPLQDPSTLKKKFDDI
FSATRYTKALEVIKKLHKDQAHEIKTYKLKLENLQTLKDAAYKLRESIAQDQERTESLKT
QMQELEGSIQNVDAKIHHTEATLKDLRKLQDQISTKTAERSTLFKEQQKQYAALAEENED
TDEELKEWKNKFEERIALLESKISKLEREMNDTETKSSFLKQTINEYIWEISKLQTEAEA
HMSLKNERDSTIQKLFARHNLGSLPNTPFSNEGALGLINRIKSRLTNLEKDLEDKKKSNE
NELKTAWDHYMDANDRWKNMDAQKQAKLEIKSGILKRIEEKENERDSFELRISNVNLSHI
DEKEKNLHIEVERKTNQLAEKDFESNIRQKQSELYSIEQKIKAINREKDIMAADSEDRVK
LSLKKAELDNHKKKHKKIIDEYKDRIRGVLKGRLPPEKDLKKEITQALRAVGIEFDDLNT
KSREAEKEVNMLQIKIQEVNNSLSKHHKDMESRKRFIESKLQSLDRQYLSIDAYLKVLES
AKEKKDVQKSKYNIADGMRQMFDPFERVARAHHVCPCCERPFSAEEEDEFVKKQRVKAAS
SAEHMKVLAVETSNADSFFQQLDKLRMVYEEYVKIGEETIPNAEKDLHGLTEELDQKSQA
FDDVLGVLAQVKADKDSIEVLVQPIDTADRLFQEIQTWLKQVDDLEYKLDFRGQGVRTME
EIQSELNTLQSTKDGLHNELEKLRDEQRYMENDLSNIQIRWHTVREEKVNAANTLRDVKK
AEEELERLTEEKSQVDLDDKHLVEALGPLSKEKDKLLSDHNELKAKLNREYEEQAEQKRN
YQQEVESLLKITSRIKEYYDLKKDDRLTEVQEKQSLSESQLQSCDVRKQEILAELNKSKD
LMRNQDQLRRNIEDNLNYRKTKAEVDELTREIESLEERILKIGGVSTIEAELRKLSQERE
RLLSELNRCHGTMSVYQSNISKNKIDLKQAQYKDIDKRYFDQLIQLKTTEMANKDLDRYY
NALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDYISIRSDSEGAGTRSYSYRVLMQT
GDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALL
RIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSIIEAQEIFD
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
atgagcaccgtcgataaaatgctaatcaaaggcatccggagcttcgatccggagaacaag
aacgtcatcaccttcttcaagcccttaaccctaatcgtcggccccaacggagctggaaaa
accaccattatagagtgcttgaagctttcgtgcaccggagagttgcctcccaatgcaagg
tccggccacagtttcattcatgaccccaaggttgcaggggaaacagagacaaaagggcaa
attaagcttcgtttcaagacagcagcggggaaggatgtggtgtgcataaggtcgtttcag
ctgacacagaaggcatcgaagatggaatataaggcaattgagagcgtgcttcaaacaatt
aaccctcacactggagagaaagtttgccttagctatagatgtgctgatatggatagagag
atcccggctttaatgggtgtttcaaaggctgttctggaaaacgtgatatttgtacaccaa
gatgaagctaattggccattgcaagatccttccacattaaaaaagaagtttgacgatatc
ttctctgctacccgatatacaaaggcattggaggttataaaaaaacttcacaaggatcaa
gctcatgaaataaagacctacaagttaaaattggagaatcttcaaactttgaaagatgct
gcatataagcttcgggaaagcattgctcaagatcaagagagaacagaatctctgaaaact
caaatgcaggaattggagggtagcatccaaaatgtggatgctaaaattcatcatactgaa
gcaacactgaaagatttgcggaaactacaggaccagatatcaaccaagactgccgaaaga
agtactttgtttaaggagcagcagaaacaatatgctgctcttgctgaggagaatgaagac
actgatgaagagttgaaggaatggaaaaataagtttgaagaaaggattgcacttttggaa
tctaaaataagcaagttggagagggaaatgaatgacacagagactaaaagttcttttctt
aagcagacaattaatgaatatatctgggagattagcaagcttcaaactgaagctgaagct
catatgtctttgaagaatgaacgggattccaccattcaaaaactttttgcaaggcataat
ctagggtctcttccaaatacacctttcagcaatgaaggtgctttgggcctcataaataga
ataaaatctaggttgacaaatcttgagaaggatctggaggataaaaagaaatcaaatgaa
aatgaacttaagacagcatgggaccattacatggatgcaaatgaccgttggaaaaatatg
gatgctcaaaaacaggcgaaattggagatcaagagcggcattttgaaacgcattgaagag
aaggaaaatgagcgggattcatttgagctccgtatttctaatgtcaatctttctcacatt
gatgaaaaagagaagaacttgcacattgaggttgagagaaaaacaaatcagcttgctgaa
aaagattttgaatcaaatatacgtcaaaagcagagtgagctatatagcatagagcaaaag
ataaaggctattaatagagagaaagacatcatggctgctgattccgaggacagagtgaaa
ctgtctcttaagaaggcagagttggataatcacaagaagaaacacaaaaagataattgat
gagtacaaggacagaattagaggagtcttgaaagggcggcttccacctgaaaaggatttg
aaaaaggaaataactcaagccctaagggctgttggaattgagttcgatgacttgaataca
aaatcccgtgaagctgagaaggaggtgaatatgttgcagattaaaatacaagaagtcaat
aatagtctttccaaacatcacaaggatatggagtcaaggaagagatttattgaatcaaaa
cttcagtccttagaccggcaatatcttagtattgatgcttatctcaaagtacttgagtcg
gctaaggaaaaaaaggatgtccagaaaagcaaatacaacattgcagatggtatgcggcaa
atgtttgatccttttgaaagggttgcccgtgctcatcatgtttgcccttgctgtgagcgc
cctttctctgcggaagaggaagatgaatttgttaaaaagcaaagagtgaaggcagcaagt
tctgctgagcacatgaaggtgttggctgtggagacctcaaatgctgactcttttttccag
cagttggacaaacttcgtatggtttatgaagaatatgttaaaattggagaggaaactatt
cctaatgctgagaaagatttgcatgggctgactgaagagctggatcaaaagtctcaggca
tttgatgatgtgttaggtgttttggctcaagtaaaggctgataaggactcaattgaggtc
ttggtgcaacccattgacactgctgacaggctcttccaagaaattcaaacttggctaaag
caagttgatgatttggagtataagcttgattttcgaggacaaggtgtgagaaccatggaa
gaaattcagtcagagctgaatacgttgcaaagcacaaaggatggtttgcacaatgagctg
gagaagttaagggatgagcagaggtacatggaaaatgatttatccaacatccaaatacgg
tggcacactgtaagggaggagaaggtcaacgcagctaatacattgcgtgatgttaaaaag
gcagaggaagagttagaacgtttaactgaggaaaaaagtcaagttgatctcgatgataag
catttggtggaagcccttggccctctatcaaaggagaaagataaattactgagtgaccac
aatgaattgaaagctaagcttaatcgtgaatacgaggagcaggcagaacaaaaaagaaat
taccagcaggaagtggagagtttacttaaaattacttcaagaattaaagagtattatgat
ctaaagaaagatgatagattgacagaggtgcaagaaaagcagtctctatcagaatctcag
cttcaaagttgtgacgttaggaagcaggaaattttagctgaactaaacaaaagtaaagac
ttgatgaggaatcaggatcaactaagacgaaatattgaggacaacttgaattacaggaaa
acaaaggctgaggtagatgagcttactcgtgaaattgaatcactggaagaaagaatacta
aaaattggtggagtttcaaccattgaagctgagcttagaaagctctctcaggaaagagaa
agacttctttcagagttgaacaggtgtcatggaacaatgtctgtttaccaaagcaatatt
tcgaaaaacaaaattgatcttaaacaggcacagtacaaggacattgacaaacggtacttt
gatcagctaatccagcttaagacaactgagatggcaaacaaggacttggacagatactac
aatgcccttgacaaagctcttatgcgcttccacacaatgaaaatggaggaaataaataaa
attattagagagttgtggcagcaaacatacagaggacaagatatagattacattagtatc
cgttcagattctgaaggtgctgggactcggtcctacagctacagggttctcatgcagact
ggtgatgcagagttagaaatgaggggtaggtgtagtgctggacagaaggtccttgcttcc
ttgataatacgattggctttagctgagactttctgcctcaactgtggtatactagcacta
gatgaacccaccacaaacttggatggcccaaatgcagagagtcttgctgctgcccttctg
agaattatggaggacagaaagggccaggaaaattttcagctgatagtgattactcatgat
gagcgttttgcccaactaattggtcaacggcagcatgcagaaaaatattatcgggtcgca
aaggatgatcatcagcacagtataattgaagcacaggagatatttgactga
DBGET
integrated database retrieval system
