KEGG   Juglans regia (English walnut): 109008893
Entry
109008893         CDS       T05245                                 
Name
(RefSeq) replication factor C subunit 2
  KO
K10755  replication factor C subunit 2/4
Organism
jre  Juglans regia (English walnut)
Pathway
jre03030  DNA replication
jre03410  Base excision repair
jre03420  Nucleotide excision repair
jre03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:jre00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    109008893
   03410 Base excision repair
    109008893
   03420 Nucleotide excision repair
    109008893
   03430 Mismatch repair
    109008893
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:jre03032]
    109008893
   03036 Chromosome and associated proteins [BR:jre03036]
    109008893
   03400 DNA repair and recombination proteins [BR:jre03400]
    109008893
DNA replication proteins [BR:jre03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    109008893
  DNA Replication Termination Factors
   ELG1-RFC complex
    109008893
Chromosome and associated proteins [BR:jre03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    109008893
DNA repair and recombination proteins [BR:jre03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     109008893
  Check point factors
   HRAD17(Rad24)-RFC complex
    109008893
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 RCF1-5-like_lid AAA_22 Rad17 RuvB_N AAA_assoc_2 AAA_16 Mg_chelatase AAA_11 ResIII DUF3802 AAA_5 nSTAND3 AAA_14 SLFN-g3_helicase AAA_24 AAA_2 PhoH AAA_28 AAA_30 AAA_19 AAA_7 AAA_25 NPHP3_N CPG4 DUF3853 T2SSE RNA_helicase Parvo_NS1 DUF815 IstB_IS21 DNAX_ATPase_lid AAA_18 TIP49 bpMoxR NB-ARC ATPase_2
Other DBs
NCBI-GeneID: 109008893
NCBI-ProteinID: XP_018844709
UniProt: A0A833TT13 A0A2I4GLE7
LinkDB
Position
15:3051555..3059449
AA seq 342 aa
MAPVLQSSQQWVEKYRPKQVKDVAHQEEVVRVLTNTLETSNCPHMLFYGPPGTGKTTTAL
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSGQRQGGYPCPPFKIII
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMS
SRILHICKEERLNLDAEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGVI
PQEIVKAFLVTCKSGNFDVANKEVNDIIAEGYPVSQMLYQLLELVVEADDVSDEQKARIC
KKLAEADKCLVDGADEYLQLLDVASNTMRALCNMPQEFSYEC
NT seq 1029 nt   +upstreamnt  +downstreamnt
atggcgccagtattgcaaagctctcagcaatgggtcgaaaaatatcggccaaaacaagtg
aaagatgtagcacaccaggaggaggtggttcgggtcctcacaaacaccctcgaaaccagc
aattgcccgcacatgctcttctacggcccaccgggcactggaaagaccaccaccgcgctt
gccattgcccaccagctctttgggcctgagctctacaagtctagggtgctggagctgaat
gcgagtgatgaccgtggcataaacgttgttagaacaaagatcaaagattttgctgccgtg
gctgttggttctggtcagcgtcaaggaggttatccatgtccaccattcaagatcatcatt
ctagatgaggcagattcaatgaccgaagatgctcagaatgccctgaggcgtactatggaa
acttactccaaagttacaagattttttttcatctgtaattacatcagcaggatcatagaa
ccacttgcttcaaggtgtgcaaagttcaggttcaaaccactttcagaagaaatcatgagc
agtcgaatattgcatatttgcaaagaagaacgtctcaatctggatgccgaggctctttca
accttgagttctatttcacaaggtgatcttcgtcgggctattacgtacttacagtcagct
gcgcgattatttggatcatccatttcttcgaaggatctgattagtgtgtctggggtcatt
ccacaagagattgtcaaggcattccttgtaacttgtaagagcggtaactttgatgtggca
aacaaggaagtcaatgatataattgcagagggatatccggtctctcagatgctttaccag
ttacttgagctggttgttgaggcagatgacgtatcagatgaacagaaggccagaatttgc
aagaaattggctgaagcagataagtgtctcgttgatggtgcagacgagtacctgcagctg
ctggatgtagctagcaatacaatgcgagctctttgtaacatgccgcaagaattttcttac
gagtgctag

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