Juglans regia (English walnut): 109009037
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Entry
109009037 CDS
T05245
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
jre
Juglans regia (English walnut)
Pathway
jre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109009037
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jre03019
]
109009037
03036 Chromosome and associated proteins [BR:
jre03036
]
109009037
Enzymes [BR:
jre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109009037
Messenger RNA biogenesis [BR:
jre03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
109009037
mRNA degradation factors
5'-3' decay
Decapping complex
109009037
Chromosome and associated proteins [BR:
jre03036
]
Eukaryotic type
Gene silencing
piRNA pathway
109009037
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Mdt30
TFIIA
CMS1
Motif
Other DBs
NCBI-GeneID:
109009037
NCBI-ProteinID:
XP_018844913
UniProt:
A0A2I4GLZ1
A0A833U502
LinkDB
All DBs
Position
12:4273060..4283584
Genome browser
AA seq
500 aa
AA seq
DB search
MNNNRGRYPPGIGAGRGGGGGGGMNLNPAFQSRVPQQQYVQRGFMQQQNHHHQQQYHHQQ
QQQQQQQQQWLRRAQLGGSDSIVDEVEKTVQSEAADSSSQDWKARLKIPPSDTRYRTEDV
TATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAF
CIPALEKIDQDNNAIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMR
LYQPVHLLVGTPGRILDLAKKGVCILKDCSVLVMDEADKLLSPEFQPSIEQLIRFMPANR
QILMFSATFPVTVKDFKERYLQRPYIINLMDELTLKGITQFYAFVEERQKVHCLNTLFSK
LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCT
DLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQ
ELGTEIKQIPPHIDQAIYCR
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atgaacaacaatagaggaaggtatccgccagggatcggcgcaggccgaggtggaggcgga
ggcggaggcatgaatctaaacccggccttccagtcgagggtcccgcaacaacagtacgta
cagagaggctttatgcagcagcagaaccatcaccaccaacaacagtatcatcatcagcag
cagcaacaacaacaacaacaacaacagtggcttaggagggcccagttgggtggttccgat
tcaatcgtcgacgaggttgagaagactgtgcagtccgaggccgccgactcaagttcgcaa
gattggaaggcaaggctaaagataccgccatctgatacacgctatagaactgaggatgtg
acagcaactaagggaaatgaatttgaggactactttctgaagcgtgagttgctcatggga
atatatgaaaaggggtttgaaagaccatctcccattcaggaagaaagtatcccaattgct
ttaacagggagtgatattcttgctagagcaaaaaatggaactgggaaaacggctgcattt
tgcattcctgcattggaaaaaattgatcaggataacaatgctattcaagttgttatactt
gttccaactcgagagttggctcttcaaacatcacaagtgtgtaaagaacttgggaagcat
ttgaatatccaagttatggtaacaacaggtggtaccagcttaaaggatgatatcatgcgt
ttatatcaaccagttcatttactggttggaactcctggaagaatcctagatcttgcaaaa
aaaggtgtttgcattttgaaagattgttctgtgcttgttatggatgaggctgataagctt
ctttctccggaatttcaaccatcaatagagcagctaattcgatttatgcctgcaaaccgt
caaattttgatgttttcagcgacatttcctgttacagtcaaagacttcaaagaaagatat
cttcaaaggccatatattattaaccttatggatgagcttacgctcaagggtatcacacaa
ttctatgctttcgttgaagaaagacagaaagtccactgcctaaatactcttttctccaag
ctgcaaataaaccaatcaattatattctgcaattctgtgaatcgggttgagctgttggcg
aagaaaattacagaacttggttattcttgtttttacattcatgcaaagatgctgcaagac
catcgtaacagagtctttcatgacttccgcaatggtgcatgcaggaatcttgtttgcact
gatctatttacaaggggaatcgacattcaagcggtcaatgtcgttattaactttgatttt
cccaagaactcagaaacatatctgcacagggttggacgatctggaaggtttgggcacctt
ggtttagccgtgaatttgatcacctatgaggaccgctttaacttgtataggattgagcaa
gaactcgggactgagataaagcaaattccaccacatattgatcaggcaatttactgtcgg
tga
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