Juglans regia (English walnut): 109011087
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Entry
109011087 CDS
T05245
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 1 homolog
KO
K10683
BRCA1-associated RING domain protein 1
Organism
jre
Juglans regia (English walnut)
Pathway
jre03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
109011087
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jre03019
]
109011087
04121 Ubiquitin system [BR:
jre04121
]
109011087
03036 Chromosome and associated proteins [BR:
jre03036
]
109011087
03400 DNA repair and recombination proteins [BR:
jre03400
]
109011087
Messenger RNA biogenesis [BR:
jre03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
109011087
Ubiquitin system [BR:
jre04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
109011087
Chromosome and associated proteins [BR:
jre03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
109011087
DNA repair and recombination proteins [BR:
jre03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
109011087
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT_2
BRCT
zf-HC5HC2H
zf-C3HC4_2
zf-HC5HC2H_2
zf-RING_6
zf-C3HC4
zf-RING_2
zf-RING_UBOX
zf-C3HC4_3
zf-C3HC4_4
RTT107_BRCT_5
PHD_NSD
Motif
Other DBs
NCBI-GeneID:
109011087
NCBI-ProteinID:
XP_018847692
UniProt:
A0A833Y0Q3
A0A2I4GUX5
LinkDB
All DBs
Position
3:complement(11063069..11069982)
Genome browser
AA seq
1012 aa
AA seq
DB search
MGHANDLERMGRELKCPICLSLLCSAVSLTCNHVFCNSCIVKSMKSGCACPVCKLPYRRR
EVRPAPHMDNLVSVYKSMEVASGINIFVTQNTSSTKLSDGKKQAAGDDNQGEYDTGGNSQ
DRTNKQNNLKGKAFKSNTKNTAKPSFPAKKRVQVPKRPFSETPTRLAQFEGELCEFAKEE
PRGSPTILKKSALSEKGEPMLSPFFWLREEEDVEKSTQQTDEDQLMDMPPVNVPAFSDIK
DSDDEYPPNLTPTGGLHGKFSHVADFDSEMFEWTQRPCSPELCSSPFKRQVANVEEINRI
QERELEAGLQGVTRNDDLRSENSKRQNSKQSGTGDMVLPDGATCRTEGRNNIIGGNKSNR
SGRIRKASERAQKCAKRHTDSDFGIYVDLNEASENFIQEQVSYNNESVGKTIIRGKKIGY
GTSATKPTPENAHAVSLETEILSHENVVTETSPSFGKKEGNDEGYTLKKAGKGPKKINCS
VRSGKRKLDSVKDTMLEEVPSIRKRKTEDAIPTLAPLSIPMAENKEASDYTHKPSKHAKE
NKSSDRELRSKNKLKVSDSIWKEDLVHDIRERPTCVPACKTQLNEKIQGKSDFKVQDDTS
VMPRLPSPINEVVLQKCETISYRFQCAFCLSSEESEASGEMVHYYNGRPAAADHNGGFKV
IHVHRNCTEWAPNVYFEDDIATNLEAELTRSRRIKCCCCGNKGAALGCYEKSCRKSFHVP
CAKFIPQCRWDTDNFVMLCPLHLSSKLPCESPGSQERRKKCPPKRKLSQRDCVASKHEIS
TSRNCNFCVSSKKLVLCCSALTTPDWEIVSDFERLSGVTVLKKWDSSVTHVIGSTDENRA
CKRTLKILMGILEGKWILSIEWIRACMKVLQLVDEEPYEISVDIHGIRDGPRLGRQRLLN
KQPKLFNGCKFYFMGDFTPSYKGYLQDLVVAAGGTILHRKPITEDPNTSIFQTFIIYSLE
MPDKCNPSKKATIINRRRSDADALASSTGAKLASKSWVLNSIAACNLQNLPE
NT seq
3039 nt
NT seq
+upstream
nt +downstream
nt
atgggtcatgcgaacgacctggagaggatgggcagagaactcaagtgccccatttgcttg
agtcttctgtgctctgcggtttctcttacgtgcaatcatgtattctgcaactcatgtatt
gtgaaatcaatgaaatcgggctgtgcttgtccagtttgtaaattgccatatcggcgtaga
gaggttcggcctgctcctcacatggataacctggtgagcgtttacaaaagcatggaagtt
gcttccggaatcaatatttttgtcactcaaaatacatcttcgactaaattgtcagatgga
aagaagcaagctgctggtgatgataaccagggtgaatatgatacaggtggaaattctcag
gacagaacaaataaacaaaataacttgaaaggaaaagcatttaagtccaacacaaaaaat
actgcaaaaccttcatttccagccaagaagagggttcaggtgccaaaacgccctttttca
gaaaccccaacaaggcttgcacagtttgaaggtgaattgtgtgaatttgccaaggaagaa
cctagaggtagtccaaccattttaaagaagtctgctctgagtgaaaagggagaaccgatg
ctttcacctttcttttggttgagggaggaggaagatgtagaaaagtcaactcagcaaact
gacgaggatcagctcatggatatgccacctgtaaatgttcctgccttcagtgatatcaag
gactcggatgatgaataccctcctaatttgaccccaactgggggattgcatggtaagttc
tcccatgttgcagattttgatagtgagatgtttgaatggacacaaagaccttgctctcct
gaactttgttcaagtcccttcaagagacaggttgcaaatgtggaagagatcaacaggatt
caagagagagaattagaagcaggtttacagggtgtaacaagaaatgacgacctaagatct
gaaaattcaaaacgccaaaattctaaacaaagtggtactggagatatggtcctgcccgat
ggggccacttgcagaactgaaggtcgtaataatataattgggggtaataaatctaatagg
agtggtagaatcaggaaggcaagtgaaagagcccaaaagtgtgctaagagacatacagat
tcagattttggaatttatgttgatttaaatgaagcatcagaaaattttatccaagagcaa
gtttcttacaataatgaaagtgtgggtaagactatcatacggggaaagaagattggttat
ggcaccagtgcaactaagccaactcctgaaaatgctcatgctgtctctttggaaacagaa
attctcagtcatgaaaatgtggtaactgagacatctccctcatttggtaaaaaagaaggc
aatgatgaaggctataccttgaagaaggctggaaaagggccaaagaagatcaattgctcg
gtaagatcagggaaacgaaagctggattctgtgaaggacaccatgcttgaagaagtacct
agtatacgaaaacgaaaaactgaggatgctatccccacgttagctcccttatctatacct
atggctgaaaataaggaagcctctgattacacccacaaaccgagcaaacatgcaaaagaa
aataagtcatctgatcgagaactcagaagtaagaataagttgaaagtttctgatagtatc
tggaaggaagacttggtacatgatatccgagagaggcctacttgtgttcctgcatgcaaa
acccaactcaatgaaaagattcagggcaaatctgatttcaaagttcaggatgatacatct
gtcatgccgaggcttccttctccgataaatgaagttgtcttacagaaatgtgagaccatt
agttataggtttcaatgtgctttctgtctttcttcggaagaatcagaggcatcaggagaa
atggtccactactataatggtaggcccgctgccgcagatcacaatggaggattcaaggtc
atacatgtgcacaggaattgcactgaatgggcccctaatgtctatttcgaagatgatatt
gcaacaaatcttgaagctgaattaactagaagtcggagaatcaaatgttgttgctgtgga
aataagggcgcagcacttgggtgctacgagaagagttgtcgcaaaagttttcatgtgccc
tgtgcaaagtttatccctcaatgtcgatgggatactgataactttgtcatgttatgccct
cttcatctctcctctaagttgccctgtgaaagccctggatctcaagaaaggaggaagaaa
tgtcctcctaaacggaaattatctcaacgtgattgtgttgctagtaaacatgaaatcagt
accagtaggaactgcaatttttgtgtctcttcaaagaaattggttctctgctgttcagct
ctcacaactcctgactgggagattgtttctgattttgagagattatctggagttacagtt
ttgaaaaagtgggattcaagtgtcacccatgttattggatctacagatgaaaatagggca
tgcaagagaaccctcaaaatattgatgggtatcttggagggaaagtggatacttagcatc
gaatggatcagggcctgtatgaaggtcctgcaactagtcgatgaggagccttatgaaatt
agtgtcgacattcatgggatcagggatggccctcgacttggaaggcaaagattgctgaac
aagcaaccaaagcttttcaatgggtgtaagttctatttcatgggagattttacaccttcg
tataaggggtacctacaagaccttgtagttgctgctggaggaacaattcttcatagaaaa
cctattacagaggaccccaacacctcaatatttcaaaccttcataatttacagtcttgag
atgcctgataaatgtaatcctagcaagaaagctacgattatcaaccgtcgccggtctgat
gcagatgcccttgcaagttcaactggagccaaactggcaagcaaatcatgggtgttgaac
tccatagccgcctgcaatttacaaaatcttcctgaataa
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