Juglans regia (English walnut): 109011588
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Entry
109011588 CDS
T05245
Name
(RefSeq) protein SMG7-like isoform X1
KO
K14409
protein SMG7
Organism
jre
Juglans regia (English walnut)
Pathway
jre03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109011588
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jre03019
]
109011588
Messenger RNA biogenesis [BR:
jre03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
109011588
mRNA cycle factors
Common to processing body (P body) and stress granule
109011588
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Motif
Other DBs
NCBI-GeneID:
109011588
NCBI-ProteinID:
XP_035544525
UniProt:
A0A6P9E8F4
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Position
3:4324834..4331731
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AA seq
984 aa
AA seq
DB search
MMAVLMDNSLDLSSRERAQRLYKLNVDLENKRRRLARASIPSDPTAWQRMRDNFEGIILE
DHTFSEQHDVEFGLWQLHYRRIEELRSHLNDSLDSNGSAMIQDGKSSSRPDRISKIRSQF
KTFLSEATGFYHDLMLKIRAKYGLPLNCFPGDPENQFVVSKDGNKSAEMKKCWISCHRCL
IYLGDLSRYKGLYGDADSKSRDYAAASSYYMQASSIWPSSGNPHHQLALLASYSGDELVT
IFRYFRSLAVDNPFSTARDNLIIAFEKNRQNFSQLLGDGKASSIRTARVRMHGKRRGRGG
AMPLLKHENTDVSSVKETASSISDISKAFSIKFVRLNGILFTRTSLETFGDVFSMVRVDL
LELLSSGPEDAYNFGSNAADSGMTILRLITILIATAHIVSRENENQSCAKMLQRSVLLQN
AYTAIFEFMGLILERCMQLFDPSKSYLLPGVLIFMEWLACHPEIAAGSEVEEKEAAARSF
FWSICVSFLNKLLSSGLISVLEDEDETCFVNMTRYDEGETANRLALWEDYELRGFLPLVP
AHMILDFSRKQSLGSDNSDKERQARFQRIIAAGKSLVSIVWVGQEYVSFDPMLKKFAIGI
ESHICDDFVLTSSWEMPVSNGMGHPPGKKMNVGNLQPEAQPYLEGEEEDEIIVFQPSVTD
NHADAIDPKFSYNFHAPLGNAPLGDKGCCIESVSAPLDGKISESTLDTDSINPNAPISLT
TILPQHLQSIQPCNSKWLLEQQVCLANGLNSLNLTENRLVGKPSLQEHFEVLEPAALSDA
LPQTLDISAGNELFAQVSDSRIPSKFDSTMSTGARFDSLSLNSSMTLPASLRKNRMSRPL
RHFGPPPGFGPVPPKPVGESLSMTTLEKETLKLDDYSWLDGYQLPLPTKDTVFDKPVTHT
AQSYHQASKGNMGMICFPFPGKQVPTLQVQMENQKNWQGYQAPDYLKVYQRWQQQQQLCK
INQDSIPMPKQYEGQTLWDGHFFV
NT seq
2955 nt
NT seq
+upstream
nt +downstream
nt
atgatggcggttctgatggataattcgttggatctttcatcaagggaacgtgctcaacgt
ctttacaaattgaatgtcgacttggagaataaacgcaggagactggcccgggcaagtatt
ccctcagatcccactgcttggcagcggatgcgagacaatttcgaaggaattatacttgag
gatcatactttctctgaacaacatgatgtagagtttggtctgtggcagttgcattacagg
cgaatagaggagcttcgttcacacctcaatgattctctggattcaaatggttcagccatg
atccaggatgggaaatcttcttcaagacctgatcgaatctcaaaaatacgttctcagttt
aaaacattcctttctgaagcaactggattttatcatgatctgatgttgaaaatcagagca
aagtatggtctacccctaaattgttttccaggtgatccagagaatcagttcgtagtgtct
aaagatggaaataaatctgctgagatgaagaaatgctggatttcttgtcatcgctgtctg
atttatctgggtgacctatcacgttataaaggtttatatggggatgctgattccaaaagt
agagattatgcagcggcatcaagttattatatgcaagcttcttcaatctggccttcaagt
ggcaaccctcatcatcagcttgcattattagcttcatattccggggatgaattggtgaca
atctttcgctattttcggagtctggcagttgataacccattttcaactgcaagagataat
ttgattattgcatttgagaagaatcggcaaaacttttcccagctgcttggtgatggaaaa
gcttcctcaatcaggactgcacgtgtgcgaatgcatgggaaaagaagaggaagaggtgga
gcaatgcctctcttgaaacatgaaaacacagatgtgagttctgttaaggagactgcatcc
agtatatctgatatttctaaagctttcagcattaagtttgttcgacttaatggtattctt
ttcactcgtacaagtctggaaacatttggagatgttttctctatggttagagttgatttg
cttgagcttctttcttctgggccagaagatgcatacaattttggttcaaatgctgcagac
agtggaatgacgattcttaggcttataacaattcttatagccacagctcacattgttagt
agggaaaatgagaatcagtcatgtgctaaaatgttacaacgttcggttttgcttcagaat
gcatatactgccatctttgagtttatggggctcatacttgagagatgcatgcaactgttt
gatccatcgaaaagctatttactgcctggagtgctgatttttatggagtggttagcctgt
catcctgaaattgcagctggcagtgaagttgaggagaaagaagctgctgctaggtcattt
ttctggagtatttgcgtttcattcttgaacaagctcttgtcaagtggattaatttctgtt
cttgaggatgaagatgaaacttgttttgttaatatgactaggtatgatgaaggtgaaact
gccaatcggcttgcactgtgggaggactacgaattgagaggttttctccctctcgttcct
gcacatatgattcttgatttttcaaggaagcaatctttggggagtgataatagtgataag
gagagacaagctcgctttcaaaggattatagcagctggaaagtctcttgttagcatagtt
tgggttgggcaagaatatgtatcttttgatccaatgctgaagaagtttgcgattggcatt
gaatctcatatatgtgatgattttgtgcttactagttcttgggagatgcctgtttcaaat
ggcatgggacatccaccggggaagaaaatgaatgtgggaaatttgcagccagaggcacag
ccatatttagaaggggaagaagaggatgagattattgttttccaaccatctgtgactgat
aatcatgcagatgcgattgatcccaagttttcttataattttcatgccccccttggcaat
gcccccctgggtgacaagggatgttgtatcgaatctgtttcagccccacttgatggtaaa
atatcagagagcactttagatactgattcaattaacccaaatgctccaatatctcttact
accattctgccccaacatctgcaatcaatacaaccatgtaattcaaagtggctgctggag
caacaagtttgtcttgccaatggattgaacagtttgaacttaacagagaataggcttgtt
gggaaacctagtttgcaagaacattttgaagttttggagccggctgcactctcagatgcc
ctcccacagactctggatatcagtgctggcaatgagctttttgctcaggtttctgactcc
aggataccatccaagtttgattcaactatgtctactggagccaggtttgatagtctctct
ctgaactcatcaatgaccttgccagcaagtttaagaaagaatcgaatgagcaggccgctg
aggcactttggtcctccacctggatttggccctgttcctccaaaaccagtgggcgagtcc
ttgtctatgactactttggagaaagagactttgaagctagatgattatagctggctagat
ggatatcagttaccattgccaactaaggacactgtgtttgacaagcctgtcactcacact
gcacaatcgtatcatcaagcaagcaagggcaatatgggtatgatatgttttccatttccc
ggaaaacaagttccaactttgcaagtccaaatggagaaccagaaaaactggcagggatac
caggctcctgattatctgaaagtataccagaggtggcagcaacaacagcaactttgtaaa
ataaatcaggactctattcccatgccaaagcagtatgaaggacaaacgttgtgggatggc
catttctttgtgtga
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