Juglans regia (English walnut): 109012023
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Entry
109012023 CDS
T05245
Name
(RefSeq) DNA mismatch repair protein MSH2
KO
K08735
DNA mismatch repair protein MSH2
Organism
jre
Juglans regia (English walnut)
Pathway
jre03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
109012023
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
jre03400
]
109012023
DNA repair and recombination proteins [BR:
jre03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
109012023
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
Motif
Other DBs
NCBI-GeneID:
109012023
NCBI-ProteinID:
XP_035546940
UniProt:
A0A6P9EF94
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All DBs
Position
6:28693086..28709950
Genome browser
AA seq
942 aa
AA seq
DB search
MVENFEEQNKLPELKLDARQAQGFLSFFKTLPHDPRAVRFFDRRDYYTAHGENATFIAKT
YYHTTTSLRQLGSGSDALSSVSISKNMFETISRDLLLERTDHTLELYEGSGSNWRLVKSG
TPGNLSSFEDVLFANNEMQDSPVVVALSPTFRENGCTIGLGYIDLTKRVLGVAEFLDDSH
FTNLESALVALGCKECLLPIESGKSSDIRNLHDALSRCGVMLTERKKTEFKARDLEVDLG
RLVKGSKEAVRDLVSAFEFAPGALGALLSYAELLADESNYENYTICRYNLDSYMRLDSAA
MRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDIKEINSRLDLVQAF
VEDTALRQDLRQHLKRISDVERLVHNLEKKRAGLQHIVKLYQSCIRLPYIKSALEGYEGQ
FSKLIKDRYLDPLELWTDDEHLNKFIALVETSVDLDQLENGEYMISPSYDTTLSALKEEQ
ESLEHQIHNLHKQTANDLDLALDKALKLDKGSQFGHVFRITKKEEPKIRKKLTTQFIVLE
TRKDGVRFTNTRLKKLGDQYQRKLEEYKSCQKDLVDRVVRTTATFSEVFGSLAGMLSELD
VLLSFADLACSCPTPYTRPDIIPSDEGDIVLEGSRHPCVEAQDWVNFIPNDCKLVRGKSW
FQIITGPNMGGKSTFIRQVGVNVLMAQVGSFVPCVKASISVRDCIFARVGAGDCQLRGVS
TFMQEMLETASILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHLVEVIKAPTLFATH
FHELTALAHESPDHGPHKKQTVGVANYHVSAHIDSSSRKLTMLYKVEPGACDQSFGIHVA
EFANFPASVVALAREKAAELEDFSPAAIIPSNAQEEVGSKRKRESDPDEISKGAARAHRF
LKEFSDLPLEKMDLKEALQQVKELKDGLQKDALNCQWLQQFF
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atggtcgagaattttgaggagcagaacaagcttcctgagctcaaactagatgctaggcaa
gctcaagggtttctctcattcttcaagaccttaccacatgacccaagggctgtacggttc
tttgatcgcagggactactatactgctcatggtgaaaatgcaacgtttattgcaaagacc
tactatcatactactacttccttgcgacaattgggtagcggatctgatgccctttcaagt
gttagcattagtaaaaacatgtttgaaacaatttcccgtgatcttctcctggagagaaca
gaccatactcttgaactctatgagggcagtggttcaaattggagattggtgaaaagtgga
actcctggaaatctcagcagctttgaagatgttttgtttgccaacaatgagatgcaggat
tcccctgttgtggttgcactatcacctaccttccgtgaaaatgggtgcactattggctta
ggttacattgatctgactaagagagtacttggggtggctgaatttcttgatgatagccac
tttacaaatttggagtcagctttggttgctcttggttgtaaggaatgcctcttgcctatt
gagagtggcaaatccagtgatatcaggaacttgcatgatgctttgagtaggtgtggtgtg
atgttaaccgagaggaagaaaactgagttcaaagcaagggacttagaagtggatcttggg
aggctcgtcaaaggttctaaagaagcggttcgagatttagtttctgcatttgaatttgca
cctggtgcattgggggcattactgtcttatgccgaattacttgcagatgagagcaattat
gaaaattatactatctgtaggtacaatcttgatagctacatgaggttagattctgctgct
atgagggcactgaatgtcctggaaagcaaaacagatgcaaacaaaaattttagtttgttt
ggtctcatgaatagaacttgtactgctggaatgggaaagcgattattgcacatgtggcta
aagcagcctttattagacataaaggagatcaactccagactggatttggtacaagcattt
gtggaggatactgcacttcgccaagatctgagacaacacctgaaaagaatttcagatgtt
gagcggctagtgcacaatcttgagaagaaaagagctggtttgcagcatattgtgaaactt
tatcagtcatgtataagacttccctatattaaaagtgccctggaaggttatgagggacag
ttttccaaactgatcaaggacaggtatttagatcccctcgagttatggactgatgatgag
cacctgaataagttcattgcacttgtagaaacttctgttgaccttgatcaacttgagaat
ggggaatacatgatttctccaagttatgatactacactgtctgcattgaaagaagaacaa
gagtcactggagcaccaaatacataatttgcataaacaaactgcaaatgatcttgacctg
gccctagataaagctttaaagttagataagggctctcaatttggacatgtttttagaatt
acgaagaaggaggagccaaaaataaggaaaaagctcaccactcaatttattgtccttgaa
acccgaaaggatggagttagatttaccaatacaagactcaaaaagctgggtgaccaatat
caaaggaagcttgaggaatacaagagttgtcagaaagatctggttgaccgtgtagttcga
actacagcaacattctctgaggtgtttggttctttagcagggatgctttctgagttggat
gtcttactaagttttgctgatttggcttgtagctgtcctactccttacacaagaccagac
atcattccatcggatgagggagatattgtcttggaagggagtagacacccttgtgtggag
gctcaagactgggtgaattttataccaaatgattgtaaactggtcagggggaaaagttgg
ttccaaataattaccgggccgaacatgggtggaaaatccacattcattcggcaggtcggc
gtgaatgttctaatggcacaagttggttcctttgttccatgtgtcaaagctagcatttct
gttcgtgattgcatttttgctcgtgtgggcgctggtgactgccagttacgtggagtttct
acgtttatgcaagaaatgcttgaaactgcatcaatattgaaaggagcaacagataagtca
ttgataatcattgatgagttgggccgtgggacatcaacttatgatggatttggtttagct
tgggccatctgtgagcatcttgttgaagtgatcaaggcacctactctgtttgcaacccac
tttcatgaactgactgcgttagctcacgaaagtcctgatcatgggccacataagaagcaa
actgttggtgtggcaaactatcatgttagtgcccacattgactcatcaagtcgcaagctg
actatgctgtataaggttgagccaggggcttgtgatcaaagttttggaattcatgttgca
gaattcgcaaactttcctgcaagtgttgttgcccttgctagagagaaggcagctgaattg
gaagatttctcgcctgctgcaatcattccaagcaatgctcaagaagaggtgggatcaaaa
cgaaagagggagagtgatcctgatgagatatctaaaggtgctgcacgagctcaccggttt
ttgaaagagttctctgatctcccgttagagaaaatggatttgaaggaggccctccaacaa
gttaaggaattgaaggatggcttacagaaggatgctctaaactgtcagtggctccagcaa
ttcttctag
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