KEGG   Juglans regia (English walnut): 109012319
Entry
109012319         CDS       T05245                                 
Name
(RefSeq) DNA-directed RNA polymerase V subunit 1 isoform X1
  KO
K16251  DNA-directed RNA polymerase V subunit 1 [EC:2.7.7.6]
Organism
jre  Juglans regia (English walnut)
Pathway
jre03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:jre00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    109012319
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:jre03021]
    109012319
Enzymes [BR:jre01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     109012319
Transcription machinery [BR:jre03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     109012319
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_5 RNA_pol_Rpb1_3 RNA_pol_Rpb1_1
Other DBs
NCBI-GeneID: 109012319
NCBI-ProteinID: XP_018849433
UniProt: A0A2I4GZX0 A0A833U891
LinkDB
Position
14:1217684..1247485
AA seq 1932 aa
MEENPSSTILDGEIIGIRFGLATHHEICTASISDCPISHASQLANPFLGLPLEFGKCESC
GTSEPGKCEGHFGYIELPIPIYHPSHVGELKRMLSLLCLKCLKMKRNKVPLKSAGLAERL
LSSCCEDSPQVSIREVKTTDGACYLELKLPQRSLRNGSWNFLEIYGFRYGDDLCRTLLPC
EVKKMLKRIPEETRKKLSGKGYFPQEGYILKYLPVPPNCLSVPEISDGVSVMSSDPSLVM
LKKVLRQVEIIKSSRSGTPNFESHEVEANELQSAINQYLQIRGSVKASRDIDSRFGLSKE
PNDSTTKAWLEKIRTLFIRKGSGFSSRSVITGDAYKRVDEIGIPFEIAQMITFEEKVNVH
NLKYLQELVDNKLCLTYRDGSSAYSLREGSKGHTFLRPGQVVHRRIMDGDMVFINRPPTT
HKHSLQALAVYVHDDHTVKINPLICGPLSADFDGDCVHLFYPQSLAAKAEVLELFSVDKQ
LLSSHSGKINLQLATDSLLSLKTMFKTYFLDRSAAQQLAMFASSSLPRPALLKVHSAAPY
WTALQILQTALPACFDCCGETYLISQSDVLKIDFNGDVISSVVNEIVTSIFFEKGPEEVL
KFFNSLQPLLMENIFAEGFSVGLNDFSINREDIQNIQKNIQSISPLLYHLRETYNELVEL
QLENRIKDVKVPVTNFILKSALGDLMDSKNDSAINKVVQQIGFLGLQLSDKGKFYSKTLV
EDVAALFRCKYSSGVDYPSAEYGLVQNCFFHGLDPYEEIVHSISTREVMVRSSRGLSEPG
TLFKNLMAILRDVVICYDGTVRNVSSNSIIQFDYGVNARGKPNNLFPAGEPVGVLAATAM
SNPAYKAVLDSSPSSNSSWELMKEILLCKVIFKNELIDRRVVLYLNECGCGRKCCREKAA
YLVKNQLKKVSLKDTAVEFLIEYKDQQNVAESSEIDAGLVGHVHLNEMLLGEMNTSMHDV
LQKCQETLSSFRKKKKVSHVFKKTILSISECCSFQQCGANRSSGIPCLMFSWPDTSDIYL
ERTANILADIICPVLLETIIKGDPRVCSANIIWINPGTTTWIRNPCKSEKGELALDIVLE
KSAVKQSGDAWRIVLDCCLPVLHLIDTRRSIPYAIKQLQELLGISCAFDQAVQRLATSVT
MVAKGVLKEHLILLANSMTCAGNLVGFNSGGYKALSRSFNVQAPFAEATLFTPRNCFERS
AEKRHVDSLSSIVASCSWGKHVAVGTGSRFDVLWDTRQVGLNEEGGIDVYNFLHMVRGAA
NGEESNTGCLGADTDDLMLEDECAEWAPSPEHNSSFDKPFFEDSAEFENCLDNRPEESTW
DASTSWDKQMTRENASSGWGTNKAEPGDVSTKPAMDSSKSSGWGASAGWENNTATKNDSS
GWGMGGDESRVAFISKKAQENSSTSHGWDAVAPLGKVSKDVEESGWETSTVTKNVSSVWG
TNKTESGDVSPKAAEKSSKSSGWGGMAGRDINSATKNDSSGWGTGGDQSRVAFVSKKAPE
NSSGSHSWDAVIPWGKGDKDVQKNTATKNVSSGWGMGGDESRDGSVSKTEQENSSGSHGW
DAVTPLGRRDGDGEENSLNKNVSSGWGTGGDESRDAFVSKKAQENSSRSCSWDAATPSGK
NAGDAVESSRFDGKPLVEKKTEPSDWDKKVTQETVQSTSGWVSSTIEVGTRDEHSSPSVE
HCESPAINHSWGQLKSPEPSQGWGSWNESNQLASLNSWDSPNADGGNESERPRWGRQSAE
PFKKNSFEGSRGWGSNSGERKSNWSAKSPGRSHTGSSASGIYTATRQRLDMFTSEEQDVL
LDIEKVMQSIRRIMHQSGYNDGDPLSSEDQSYIQDSVFNYHPDKAVKMGAGIDHFMVSRH
SNYQDSRCFYVVSTDGRKEDFSYRKCLDNFIKSKYPDVAEAFLAKYFRKPRSGGNRESNS
VPEETGKKELGQ
NT seq 5799 nt   +upstreamnt  +downstreamnt
atggaggaaaatccctcttcaactattttagatggcgagattattgggatcagatttggt
ttggcaactcatcatgaaatctgtacagcatcgatcagtgactgccctattagccatgcc
agtcaacttgcgaatccctttcttggtctgcctcttgaatttggcaaatgtgaatcttgt
ggtacttctgaaccagggaaatgtgaagggcattttggatacattgaattaccaattccg
atctaccatcctagccatgttggtgaactgaagaggatgttgagcttactttgcttgaag
tgcttaaagatgaaaaggaacaaggttccactaaagagtgctggtttggcagaaagattg
ttatcttcctgttgtgaggattctccacaagtttctatcagagaggtaaaaaccacagat
ggtgcttgttacttggaactgaagcttcctcaacggtcacttcggaatggttcttggaac
tttttggaaatatatggttttcgctatggtgacgatttgtgtcgaactttgcttccttgt
gaggtgaagaaaatgctcaaaagaattcctgaggagactaggaagaagctttctggaaaa
gggtatttccctcaagaaggatatatcctgaaatacttacctgtccctccaaactgtttg
tctgtgccagaaatctctgatggtgtcagtgtcatgtcttcggatccttctttggtgatg
ctcaaaaaagtgctcaggcaagtggagatcatcaagagttcaagatctggtacaccaaat
tttgaatctcatgaagttgaagctaacgagttgcaatcagctataaatcagtatctgcag
attaggggttctgtaaaagcatctcgtgatatagactcaagatttgggctgagcaaagag
ccaaatgattccacaacaaaagcatggctcgaaaaaattagaacattgttcatcagaaaa
ggttcaggcttctcgtcccgcagtgtgattactggggatgcatataaaagggttgatgag
attgggatcccctttgagattgcgcagatgatcacttttgaggagaaagttaacgttcac
aatttgaaatatttgcaagagctagtagataataagttgtgcctaacatatagagatggt
tcttcagcatattcgctgagggagggttcaaaggggcatacatttctgcgacctggtcaa
gtagtacaccgacgcattatggatggggatatggttttcattaatagaccaccaaccact
cacaagcattccttgcaagcacttgcagtgtatgttcatgatgaccatacagtgaagata
aacccgcttatttgtggcccattgagtgctgattttgatggtgactgtgtgcatctcttc
tatcctcaatctcttgctgcaaaagcagaagttttggaacttttctctgtggataagcag
ttgcttagctctcacagtggtaaaatcaacttgcaactggccactgactcattgctgtcc
ctaaagacaatgtttaagacatacttcttggacagatcagcagctcagcaattggctatg
tttgcttcatcttcattgccacggcctgctttgttgaaggttcattccgctgccccttat
tggactgctttgcagatattacagactgctttgcctgcatgctttgactgttgtggggaa
acatacctgattagtcagagtgatgttttgaaaattgacttcaatggtgatgttatatcg
tctgtggttaatgaaattgtgacatcaattttctttgagaagggtcctgaagaggtttta
aaattcttcaattccttacagcctttgttgatggaaaatatatttgcggaaggttttagt
gttggcttaaatgacttttccataaacagggaggacatacaaaatattcagaagaatatt
cagtctatttctcctttgctgtatcacctaagagaaacatataatgagctggtggagttg
caattggagaatcgcatcaaagatgtgaaagtgccagttacaaattttattttgaagtct
gcattgggtgatttaatggactccaaaaatgattcagccattaacaaggtagttcaacaa
attggcttcctgggcctgcaactttctgataaaggaaaattttattctaagaccttagtt
gaagacgtggctgcactttttcgttgtaaatattcttctggagttgattacccttctgca
gagtatggattagttcaaaattgtttttttcatgggttagatccctatgaggagattgtt
cattcaatatctacgagagaagtaatggtccgctcgtcaagaggattgtctgaacctggt
actttatttaaaaacttaatggccatccttcgagatgttgttatttgttacgatggcacc
gtcagaaatgttagcagcaattccataatccaatttgattatggggtaaatgcgagaggt
aagcccaacaatttatttcctgctggtgaacctgttggcgtcttagctgcaacagcaatg
tcaaatcctgcatacaaggcagttcttgattcttctccaagcagtaattcctcatgggag
ctgatgaaggaaatactgctttgcaaggtcatttttaagaatgaacttattgatcgccgt
gtagtattatatttgaatgaatgtggctgtgggagaaagtgttgccgagagaaagcagca
tatttagtaaagaatcaattgaagaaagtcagccttaaagatactgcggttgagtttctg
attgaatataaagaccagcaaaatgtagcagaaagttctgaaattgatgcaggccttgtt
ggtcatgttcatctaaatgagatgctgttgggagagatgaacaccagtatgcatgatgtt
cttcaaaagtgccaagagactcttagttcgttccgaaagaagaagaaagttagtcatgtt
tttaaaaaaacgattctgtctatcagtgaatgttgctctttccagcaatgtggtgcaaat
agaagctctggtatcccatgtttgatgttttcttggccagacacaagtgatatttatttg
gagaggactgcaaatatccttgcggacattatttgccctgttcttttagaaaccatcatt
aaaggtgaccctcgagtttgctcagcaaacataatatggatcaatccaggtacgacaact
tggataagaaacccttgcaagtctgaaaagggtgaattagcactggacatcgttctggag
aaatcagctgtgaagcaaagtggtgatgcttggaggattgtattagactgttgtcttcct
gttcttcatttaatcgacaccaggcgttccataccatatgcaataaagcagcttcaagaa
ttgctagggatttcttgtgcttttgatcaagctgttcagcgccttgcaacatcagtgaca
atggtggcaaaaggtgttctcaaagagcatctcattctcttggcaaatagcatgacatgt
gctggaaatttggttggcttcaattctggtggttataaagctttgtctcgctcatttaat
gtccaagcaccatttgcggaagcgacactttttacaccaagaaattgttttgagagatct
gctgaaaagcgacatgtggattctctatcgagcatagttgcatcttgttcctggggaaaa
catgtggcagtgggtacaggatctagatttgatgtcctttgggacacaaggcaggtagga
ttgaacgaagagggtggaatagatgtgtataactttctacatatggtgagaggtgctgca
aatggagaagaatcaaataccggttgtctgggtgcagatactgatgatcttatgctggaa
gatgaatgtgcagagtgggctccctccccagagcataactcaagttttgataagccattc
tttgaagacagtgctgagtttgaaaattgtttagataatcggccagaggaatcaacatgg
gatgcttctactagttgggacaaacaaatgactagagaaaatgcttcatctggttggggg
acaaataaagctgaaccaggtgatgtgtccacaaaacctgccatggattcttccaagtcc
agtggttggggtgccagtgctggatgggagaataatacagcaaccaagaatgattcttct
ggttggggaatgggtggagatgaatcacgagttgctttcatctccaaaaaagcacaagag
aactcttccacatcccacggctgggatgctgtggctcctttgggaaaagtgagcaaagat
gttgaggaatctggatgggagacaagtacggtgaccaaaaatgtttcttctgtttggggg
accaataaaactgaatcgggtgatgtttccccaaaagccgcagagaaatcttccaagtcc
agtggttggggtggtatggctgggcgggatataaattcagcaaccaaaaatgattcttct
ggttggggaacgggtggagatcaatcacgagttgcttttgtctccaaaaaagcgccagag
aactcttctggatcccacagctgggatgctgtgattccttggggaaaaggggacaaagat
gttcagaaaaatacagctaccaaaaacgtttcttctggttggggaatgggtggtgatgaa
tcacgagatggttctgtctccaaaacagagcaagagaactcttccggatcccatggctgg
gatgctgtaactcctttgggaagaagggatggagatggtgaggaaaattcattgaacaaa
aatgtttcttctggttggggaacaggtggagatgaatcacgagatgcttttgtctcaaaa
aaagcacaagagaactcttccagatcctgtagctgggatgctgcaactccttcgggaaaa
aatgctggggatgctgtagaatcgtccagatttgatgggaagcctctggttgaaaaaaaa
acagagccttctgattgggataagaaggtaacacaggagacagttcagtcaacttctggt
tgggtttcttcaactattgaagtagggactagagatgaacattcatccccttctgtggaa
cattgtgagtcacctgccatcaatcattcatgggggcagctgaagtcaccagaaccttca
caaggttggggctcttggaatgagtctaatcaattagcaagtttgaacagttgggactca
ccaaatgctgacggtggaaatgaaagtgagagacctcggtggggaaggcagagtgcagaa
ccattcaagaaaaattcgtttgaaggatcaaggggatggggttcaaattctggagaaagg
aaatctaactggtctgcaaaatctcctggaaggtcacatactggttctagtgctagtgga
atatatactgcaaccagacagcgattagatatgttcacttccgaggaacaagatgttctg
ttggacattgaaaaggttatgcagtctattagaagaataatgcatcagtctgggtataat
gatggggacccactatcatctgaagatcagtcctatatacaggatagtgtttttaactat
catccagataaagctgtgaaaatgggtgctggaattgatcatttcatggttagcaggcat
agcaattaccaggatagccggtgcttctacgttgtctcaactgatggtcgtaaggaagat
ttttcctatcgcaaatgcctggataacttcatcaagagcaagtatccagacgttgctgaa
gcattccttgcaaagtatttcagaaagccccgttctggaggaaaccgggaaagcaattcc
gttccagaggaaacgggtaaaaaagagctagggcagtaa

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