Juglans regia (English walnut): 109012385
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Entry
109012385 CDS
T05245
Name
(RefSeq) WD repeat-containing protein ATCSA-1-like isoform X1
KO
K10570
DNA excision repair protein ERCC-8
Organism
jre
Juglans regia (English walnut)
Pathway
jre03420
Nucleotide excision repair
jre04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
109012385
09124 Replication and repair
03420 Nucleotide excision repair
109012385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
jre04121
]
109012385
03400 DNA repair and recombination proteins [BR:
jre03400
]
109012385
Ubiquitin system [BR:
jre04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
109012385
DNA repair and recombination proteins [BR:
jre03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Cul4-CSA complex
109012385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
WDR55
EIF3I
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_2nd
Beta-prop_EML
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_SCAP
Beta-prop_SPT8
WDR90_beta-prop_4th
Beta-prop_Nup120_160
WD_LRWD1
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
WD40_RFWD3
Beta-prop_LRRK2
Beta-prop_RIG_1st
Motif
Other DBs
NCBI-GeneID:
109012385
NCBI-ProteinID:
XP_018849529
UniProt:
A0A2I4H065
A0A833U307
LinkDB
All DBs
Position
11:31282426..31291089
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AA seq
447 aa
AA seq
DB search
MWKEIGDREAGKLRPRLFANRIKSNRVRTLQLSNHKDIVSPHRGSINSLQVDLTEGRYLL
SGASDASAAVHDVQRATDFEGGGLIAKHKCIFVTNKQHERGHKYAISSAIWYPVDTGLFV
TGSYDHHINVWDTNSTQVVMNFKMPGKVYRTAMSSVATSHMLIAAGTEDVQVRLCDIASG
AFAHTLSGHRDGVISVEWSTSSEWVLVTGGCDGAIRFWDIRRAGCFLVLDQSHSQLGRRP
PIPERSAANKASTSKSLSRAQQRKLAGGNGTKQSPTARMPTKGSVRQRLHPGLLSSQDRA
TAHYGAVTGLKLTEDGMYLLSAGSDSRLRLWDVESGCNTLVNFETVRLQTSKPIQLATTQ
DSAFVFVPCMSAVKAISLSMAFDVWSGKTSLTFRGHYEYVNCCWFSSQEQELYTGGNDRQ
ILVWSPSSLIADELDEEQAQDQDNWSD
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atgtggaaggagatcggagacagagaagcgggcaaactacgcccaagattgttcgcaaat
cgcattaagtccaatcgagtccgcactctccaactctccaatcacaaagatatcgtctcc
cctcacagaggctctatcaactcccttcaggttgatttgacagagggacgatatttgctc
tctggtgcatcggatgcttcagcagctgttcatgatgttcaacgtgccacagattttgag
ggtggtggtctcatagcaaagcacaaatgcatatttgttaccaacaaacaacatgaacgt
gggcataaatatgccatatcgtctgccatatggtatcctgttgacacagggctattcgtc
acaggctcatatgatcatcacataaatgtttgggatacaaatagcacacaggtggtgatg
aacttcaaaatgcctgggaaggtttataggactgccatgtcctcagtggcaacgtcccac
atgctaattgctgccgggacagaagatgttcaagttcgcctttgtgatattgcgtcgggg
gcatttgctcacacactgtctggtcaccgggacggtgtgatatcggtggaatggtcaact
tctagtgagtgggttttggttacgggaggatgtgatggtgcaatacgtttttgggacatc
aggcgtgctggatgttttctggttttagatcagtcccattctcagcttgggagacgccca
cctattcctgaacgctctgccgctaataaggcttcaacatcgaagtccctatcacgggca
caacaaaggaagcttgctggtgggaatggtacaaaacagtcacccactgctagaatgcca
actaagggatctgtgagacagagattacatcctgggctgttatctagtcaggatcgtgcc
actgctcattacggtgccgttaccgggttaaagttaactgaagatggcatgtatcttcta
agtgcaggttctgattcaagattaaggctgtgggacgttgaatctggctgcaatacactt
gtgaactttgaaactgtccgactgcaaaccagcaagccaatacagttggcgacaactcag
gattcagcctttgtttttgttccatgcatgtcagctgtgaaggcaatctcgttatctatg
gcatttgatgtatggtcaggtaagacatccctgacatttcgaggacactacgaatatgtg
aactgttgctggtttagttctcaggagcaggaattatacacaggtggaaacgataggcaa
attcttgtgtggtccccatccagtttgattgcggatgaattggatgaagaacaagctcaa
gatcaggataactggagcgattga
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