Juglans regia (English walnut): 109012480
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Entry
109012480 CDS
T05245
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1B-like
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
jre
Juglans regia (English walnut)
Pathway
jre04120
Ubiquitin mediated proteolysis
jre04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
109012480
04120 Ubiquitin mediated proteolysis
109012480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
jre04121
]
109012480
Enzymes [BR:
jre01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
109012480
Ubiquitin system [BR:
jre04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
109012480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4_3
zf-ANAPC11
zf-RING_16
zf-RING_11
zf-RING_5
FlxA
Motif
Other DBs
NCBI-GeneID:
109012480
NCBI-ProteinID:
XP_018849693
UniProt:
A0A2I4H0L2
A0A833T916
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Position
16:2907058..2918152
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AA seq
558 aa
AA seq
DB search
MMKLHSYAGLSLIATLAVIYHAFNSRGQFYPAMVYLSTSKISLVLLLNMGLVIMCIMWQL
TKQLFLGSLREAEIERLNEQSWREVMEILFAITIFRQDFSVTFLAMVTALLLIKALHWLV
QKRVEYIETTPSVPIISHIRIVSFMGFLLLLDSLFLYNNIKFLMKEKKASVSVFFSFEYM
ILATTTVSTFVKYVFYVIDMLMEGQWERKPVYTFYLEIVRDLLHLSMYLCYFLVIFMNYG
VPLHLIRDLYETFRNFRIRAVDFIRYRKITSNMNDRFPDATPEELNASDVTCIICREEMT
TAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPEDGTNTAAGHGSRSDVNQQGTGTG
STSPQGSIGSGVAGDNLSQHQARLQAAAAAASIYEKSYVYPSANTLVWSPGYAVLPQVQR
TSADSANSAARESSGEEASIGQQEPQFTTSGGPAKSSSPQYPHCIFVPFQAPGTNVTYAD
RSDGNLNIPDSQLEAQTQFLRHQIVVMQNQLQLLQKPKVKENTDIGSTTTSDNKGKNVAT
TSSVSDCGRHGEIEEADT
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgatgaagctgcattcttatgctgggcttagtttaattgcgactctagcagttatatac
catgcatttaacagtagaggccaattttatccggccatggtttatttgtcaacctctaag
atcagcttggtgctccttctcaacatgggcctggtcattatgtgtatcatgtggcagttg
acgaaacagctgttccttggttcactccgagaagcagagattgagaggctaaatgagcag
tcatggagggaggtcatggaaatcctatttgcgatcaccattttccggcaggacttttct
gttacatttcttgctatggtcacggctctattgctaatcaaggctttgcattggttagtt
cagaagagggttgagtacattgagactactccatcagtacccatcatatctcatattcgg
attgtttcttttatggggttcctcctccttctggatagtctcttcttatacaataatata
aagtttttgatgaaggaaaagaaggcgtcagtttcagtcttcttttcatttgagtacatg
atactggcaacaacaacagtttcaacatttgtaaaatacgtattctatgttattgacatg
cttatggagggacagtgggaaaggaagcctgtctacacattttacttggaaattgtccga
gacttgcttcacctgtctatgtacttgtgctacttccttgtgattttcatgaactatggt
gtgcctttgcacttaatacgagatctctatgagacgtttagaaatttcaggattcgtgct
gttgatttcattcgttatcgaaagatcacttcaaacatgaacgatcgatttccagatgca
acaccagaagaactcaatgcaagcgatgtaacatgcatcatttgtcgtgaagagatgacg
acggccaagaaactaatttgtggacatctatttcatgtgcattgccttcggtcatggtta
gagcgacagcatacttgtcctacttgcagagccctagttgtaccacccgaagatggaaca
aatacagctgcagggcatgggtcacggtcagatgttaatcagcaagggacaggcacagga
agtacgtctcctcagggttctattggtagtggtgtggcaggtgataatttgagccagcat
caagctagactccaagctgctgctgcagctgcctcaatatatgagaaatcttatgtttat
ccttctgcaaatacgctagtatggtcccctggatatgctgtacttcctcaggttcaaaga
acttcagctgattctgccaactctgctgccagggaatccagtggagaagaagcttccatt
ggacaacaagaaccacagttcacaacctctggcggacctgcaaagtcatcctctcctcaa
tatccacactgtatatttgttccttttcaggcacctggaaccaatgtgacttatgcagat
aggtctgacggcaatctaaatataccagactcgcagttggaagctcagacacaatttctt
agacatcagattgtggtaatgcaaaatcagctccaacttctgcagaagccaaaagttaag
gaaaacacggacattggttcaacaacaacatcagataacaaaggaaagaatgttgcaaca
acatcatctgtctcagactgtggtcgtcatggggagattgaagaggctgatacataa
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