Juglans regia (English walnut): 109013127
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Entry
109013127 CDS
T05245
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15 isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
jre
Juglans regia (English walnut)
Pathway
jre03013
Nucleocytoplasmic transport
jre03015
mRNA surveillance pathway
jre03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109013127
09122 Translation
03013 Nucleocytoplasmic transport
109013127
03015 mRNA surveillance pathway
109013127
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jre03019
]
109013127
03041 Spliceosome [BR:
jre03041
]
109013127
Enzymes [BR:
jre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109013127
Messenger RNA biogenesis [BR:
jre03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
109013127
Spliceosome [BR:
jre03041
]
Complex C
Other components
EJC/TREX
109013127
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
109013127
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
109013127
NCBI-ProteinID:
XP_018850655
UniProt:
A0A833XGY3
A0A2I4H3C0
LinkDB
All DBs
Position
7:complement(46282731..46288809)
Genome browser
AA seq
427 aa
AA seq
DB search
MGEVKDNDYEEELVDFEDDDPKAPDSASARPAADSVKKGYVGIHSSGFRDFLLKPELLRA
IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALVL
CHTRELAYQICHEFERFSTYLPDIRVAVFYGGVNIKSHKDMLKNECPHVVVGTPGRILAL
GRDKDLGLKNVRHFVLDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVC
KKFMQEPMEIYVDDETKLTLHGLVQHYILLKEAEKNRKLNDLLDALDFNQVVIFVKSVHR
AAELNKLLEECNFPSICIHSGMAQEERLKRYKNFKEGQSRILAATDLVGRGIDIERVNIV
INYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAADSDVLNQVQSRFEVDIKELPEQID
TSTYMPS
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaagtcaaggacaacgactacgaagaagagctcgtcgacttcgaagatgatgac
cctaaggcccccgactccgcctcagctagacccgcagctgattccgtcaagaagggctat
gttgggattcatagttcgggatttagagacttcctgttgaaaccagagcttcttcgagcc
attgtggattcgggatttgaacatccatcagaagtgcaacatgagtgcatccctcaagct
atcctaggaatggatgtcatctgtcaagcaaaatctggtatggggaaaactgctgtcttt
gtcctatcaactcttcagcagattgaacctgttgctggtcaagtggcggctcttgttctt
tgccacacaagagaactagcttaccagatttgtcatgaatttgagaggttcagtacatat
ttacctgacatcagggttgctgtcttctacggtggtgtcaatatcaagagtcacaaggat
atgctaaaaaatgaatgtcctcatgttgttgttggaacacctggacgaatattggctcta
ggaagggataaagatcttggattaaagaatgtgaggcattttgttcttgatgagtgtgat
aaaatgctagaatcacttgacatgaggagagatgtgcaggaaatcttcaagatgactcct
catgacaagcaagtgatgatgttttcagcaactctaagtaaagagatccgtcctgtttgc
aaaaaatttatgcaagagccaatggaaatttatgttgatgatgagacaaaattgactctt
catggtcttgtacagcactacattttattgaaagaggcagagaaaaaccgcaaattgaat
gatcttcttgatgcattggacttcaatcaagttgttatttttgtcaaaagtgttcacaga
gcagctgagctgaacaagttacttgaggagtgtaacttcccctctatttgcatccattca
ggaatggctcaggaggaaaggttgaaacgttacaagaatttcaaggaggggcaatcaaga
attcttgcggcaacagacttagtaggaagggggattgatatagagcgtgttaacattgtt
atcaactatgatatgccagattctgctgatacatacctgcacagggtgggcagggctggc
aggtttggtaccaaggggcttgcaatcacatttgtctcatctgcagctgactcagatgtt
cttaatcaggttcagtcgaggtttgaggtggacataaaggagcttcccgagcaaattgat
acttcaacttacatgccatcatga
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