Juglans regia (English walnut): 109013568
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Entry
109013568 CDS
T05245
Name
(RefSeq) DNA-directed RNA polymerases II, IV and V subunit 3-like
KO
K03011
DNA-directed RNA polymerase II subunit RPB3
Organism
jre
Juglans regia (English walnut)
Pathway
jre03020
RNA polymerase
jre03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
109013568
09124 Replication and repair
03420 Nucleotide excision repair
109013568
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
jre03021
]
109013568
03400 DNA repair and recombination proteins [BR:
jre03400
]
109013568
Transcription machinery [BR:
jre03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
109013568
DNA repair and recombination proteins [BR:
jre03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
109013568
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_L
RNA_pol_A_bac
Motif
Other DBs
NCBI-GeneID:
109013568
NCBI-ProteinID:
XP_018851259
UniProt:
A0A2I4H548
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All DBs
Position
16:27988007..27992480
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AA seq
317 aa
AA seq
DB search
MDGGVTYQRFPKLKIREMRDDVVKFELRETDASMANALRRVMIAEVPTVAIDLVEIEVNS
TVLNDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCLTDQTLD
VTSKDLYSSDHTVVPVDFSDPNEPGEQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSP
AATVTFMYEPMIRINEDLMENLSLEDKRSWVESSPTKVFDIDPVTQQVVVVDPEAYTYDD
EVIKKAEAMGKPGLVEIEAKEDSFIFTVESTGAVKASQLVLNAIEILKQKLDAVRLSDDT
VEADDQFGELGAHMRGG
NT seq
954 nt
NT seq
+upstream
nt +downstream
nt
atggacggaggagtgacgtaccagcgtttcccgaagctgaagatccgtgagatgagggac
gacgtcgtgaagttcgagctgcgggagacagacgccagcatggcgaacgctctgaggcgc
gtcatgatcgcggaggtgcccaccgtggccatcgacctggtcgagatcgaggtcaactcc
acggtcctcaacgacgagttcatcgcccaccgccttggcctcatccccctcaccagcgac
cgcgccatgagcatgcgcttctcccgagactgcgacgcctgcgatggcgacggacagtgc
gagttctgctctgtcgagttccacctccgtgccaagtgcctcactgaccaaaccctcgac
gtcaccagcaaggacctctacagctccgaccacaccgtcgttcccgtcgatttctccgat
cccaatgagcccggcgagcagaggggcattatcattgtgaagttacgtcgtggacaagag
ctgaggctgagagctatagccagaaaagggattggtaaagatcatgcaaaatggtcgcct
gctgctactgtcacattcatgtatgaaccaatgattagaattaatgaagacttgatggaa
aatttatcgctggaggataaaagaagttgggttgagagcagtcctaccaaagtgtttgac
atcgaccctgttacccaacaggttgtagtggttgatcctgaggcatacacttacgatgat
gaagtgatcaagaaagcggaggctatggggaagccagggcttgtggagattgaggccaag
gaagatagttttatattcactgtagaatctactggtgcagtcaaagcttctcagttggta
ctcaatgccatagaaatcctgaaacaaaagctggatgctgttcgtctgtcagatgatact
gtagaagctgatgatcagtttggcgaactgggtgctcatatgcgaggaggatga
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