KEGG   Juglans regia (English walnut): 109013751
Entry
109013751         CDS       T05245                                 
Name
(RefSeq) sm-like protein LSM8
  KO
K12627  U6 snRNA-associated Sm-like protein LSm8
Organism
jre  Juglans regia (English walnut)
Pathway
jre03018  RNA degradation
jre03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:jre00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    109013751
  09123 Folding, sorting and degradation
   03018 RNA degradation
    109013751
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:jre03019]
    109013751
   03041 Spliceosome [BR:jre03041]
    109013751
Messenger RNA biogenesis [BR:jre03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     109013751
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     109013751
Spliceosome [BR:jre03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    109013751
SSDB
Motif
Pfam: LSM DUF150_C
Other DBs
NCBI-GeneID: 109013751
NCBI-ProteinID: XP_018851498
UniProt: A0A2I4H5R8
LinkDB
Position
5:21152487..21157554
AA seq 98 aa
MSSGLGLETLVDQTISVITNDGRNIVGVLKGFDQATNVILDESHERVYSTKEGVQQLVLG
LYIIRGDNISIVGELDEELDSSLDLSKLRAHPLKPVIH
NT seq 297 nt   +upstreamnt  +downstreamnt
atgtcaagtggccttggacttgaaactcttgtagatcaaactatatcagtcatcacaaat
gatggacgcaacatagtgggagtactgaaaggctttgaccaggctacgaatgttatcctt
gatgaatctcatgaacgtgtttactcgacgaaggaaggtgttcaacaacttgtgctgggc
ttgtacataataaggggcgacaacataagcattgttggggagctggatgaagagcttgat
tctagtcttgatttatcaaaactgagggctcatccccttaagcctgtcatccactga

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