Juglans regia (English walnut): 109013901
Help
Entry
109013901 CDS
T05245
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
jre
Juglans regia (English walnut)
Pathway
jre03013
Nucleocytoplasmic transport
jre03015
mRNA surveillance pathway
jre03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109013901
09122 Translation
03013 Nucleocytoplasmic transport
109013901
03015 mRNA surveillance pathway
109013901
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jre03019
]
109013901
03041 Spliceosome [BR:
jre03041
]
109013901
Enzymes [BR:
jre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109013901
Messenger RNA biogenesis [BR:
jre03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
109013901
Spliceosome [BR:
jre03041
]
Complex C
Other components
EJC/TREX
109013901
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
109013901
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Helicase_C_2
Motif
Other DBs
NCBI-GeneID:
109013901
NCBI-ProteinID:
XP_035539416
UniProt:
A0A6P9DW83
LinkDB
All DBs
Position
12:complement(27922898..27927850)
Genome browser
AA seq
427 aa
AA seq
DB search
MGEVKDNDYEEELVDFEDDDPKALDSASARPQADSAKKGYVGIHSSGFRDFLLKPELLRA
IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALVL
CHTRELAYQICHEFERFSTYLPDLRVAVFYGGVNIKIHKDMLKNECPHVVVGTPGRILAL
ARDKDLGLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVC
KKFMQEPMEIYVDDETKLTLHGLVQHYILLKEAEKNRKLNDLLDALDFNQVVIFVKSVHR
AAELNKLLEECNFPSICIHSGMAQEERLKRYKNFKEGQSRILVATDLVGRGIDIERVNIV
INYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAGDSDVLNQVQSRFEVDIKELPEQID
TSSYMPS
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaagtgaaggacaacgactacgaggaagagctcgtcgactttgaagacgatgac
cctaaggccctcgactccgcctcagctagaccccaagctgattcggccaagaagggctat
gttgggattcacagttcgggattcagagacttcctgttgaaaccagagcttcttcgagcc
attgtggattcgggatttgaacatccatcagaagtgcaacatgagtgcatcccccaagct
atcctaggaatggatgtcatctgtcaagcaaaatctgggatggggaaaactgctgtcttt
gttctatccactcttcagcagattgaacctgttgctggtcaagttgcggctcttgttctt
tgccacacaagagaactagcttaccagatttgtcatgaatttgagaggttcagtacctat
ttgcccgacctcagggttgctgtcttctatggtggtgtcaatattaagattcacaaggat
atgttgaaaaatgaatgccctcacgttgttgttggaacacctggaagaatcttggctcta
gccagggataaagatcttgggttaaagaatgtgaggcatttcattcttgatgagtgcgat
aagatgctagaatcacttgacatgaggagagatgtgcaggaaatcttcaagatgactcct
catgacaagcaagtaatgatgttttcagcaactctaagtaaggagattcgtcctgtgtgc
aaaaaatttatgcaagagccaatggagatatatgttgatgatgagaccaagttgactctt
catggtcttgtacagcactacattttattgaaagaagcagagaaaaaccgcaaattgaat
gatcttcttgatgcattggacttcaatcaagttgtcatttttgtcaaaagtgtccacaga
gcagctgagctgaacaagttgcttgaggagtgcaacttcccctccatctgcattcattca
ggaatggctcaggaggaaaggttgaaacgttacaagaatttcaaggaggggcaatcaaga
attctcgttgcaacagacttagttggaagggggattgatattgagcgtgttaacattgtt
atcaactatgacatgccagattctgctgatacatacctacacagggtgggaagggctggt
aggtttggtaccaaggggcttgcaattacatttgtctcatctgctggcgactcagatgtc
cttaatcaggttcaatcaaggtttgaggtggacataaaggagcttcccgagcaaattgat
acttcatcttatatgccatcgtga
DBGET
integrated database retrieval system
