Juglans regia (English walnut): 109013915
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Entry
109013915 CDS
T05245
Name
(RefSeq) pre-mRNA-processing-splicing factor 8A
KO
K12856
pre-mRNA-processing factor 8
Organism
jre
Juglans regia (English walnut)
Pathway
jre03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109013915
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
jre03041
]
109013915
Spliceosome [BR:
jre03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
109013915
Complex C
U5 SnRNP specific factors
109013915
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
109013915
NCBI-ProteinID:
XP_018851726
UniProt:
A0A2I4H6F3
A0A833U532
LinkDB
All DBs
Position
12:complement(28039276..28053514)
Genome browser
AA seq
2349 aa
AA seq
DB search
MWNNGQIAPPGTTGSSIPPPPAAQPSYTVLPSPAEAEARLEEKARKWQQLNSKRYSDKRK
FGFVETQKEDMPPEHVRKIIRDHGDMSSKKFRHDKRVYLGALKFIPHAVYKLLENMPMPW
EQVRDVKVLYHISGAITFVNEIPWVVEPIYLAQWGTMWIMMRREKRDRRHFKRMRFPPFD
DEEPPLDYADNLLDVDPLEPIQLELDEEEDSAVCTWFYDHKPLVKTKLINGPSYRKWHLS
LPIMATLHRLAGQLLSDLIDRNYFYLFDMESFFTAKALNMCIPGGPKFEPLYRDMEKGDE
DWNEFNDINKLIIRSPLRTEYRIAFPHLYNNRPRKVKLCVYHSPMIMYIKTEDPDLPAFY
YDPLIHPITSTNKERHEKKSRDEDDDDDDFVLPEGVEPFLNDTQLYTDTTAAGVSLLFAP
RPFNMRSGRMRRAEDIPLVSEWYKEHCPPSYPVKVRVSYQKLLKCFVLNELHHRPPKAQK
KKHLFRSLQATKFFQTTELDWAEAGLQVCKQGYNMLNLLIHRKNLNYLHLDYNFNLKPVK
TLTTKERKKSRFGNAFHLCREILRLTKLVVDANIQFRLGNVDAFQLADGLQYTFSHVGQL
TGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPMWRVWLFFLRGIVPLL
ERWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDVLDAMPEGIKQNKART
ILQHLSEAWRCWKANIPWKVPGLPVPIENMILRYVKSKADWWTNVAHYNRERIKRGATVD
KTVCRKNLGRLTRLWLKAEQERQHNYLKDGPYVTPEEAVAIYTTTVHWLESRKFSPIPFP
PLSYKHDTKLLILALERLKESYSVAVRLNQLQREELGLIEQAYDNPHEALSRIKRHLLTQ
RAFKEVGIEFMDLYSYLIPVYEIEPLEKITDAYLDQYLWYEGDKRHLFPNWIKPADSEPP
PLLVYKWCQGINNLQGIWDTSEGQCVVMLQTKFEKFFEKIDLTMLNRLLRLVLDHNIADY
VTAKNNVVLSYKDMSHTNSYGLIRGLQFASFVVQYYGLVLDLLLLGLTRGSEIAGPPQMP
NEFITYWDTKVETRHPIRLYSRYIDRVHILLRFTHEEARDLIQRYLTEHPDPNNENMVGY
NNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENSFVSVYSKDNPNLLFS
MCGFEVRILPKIRMTQEAFSNTRDGVWNLQNEQTKERTAVAFLRVDDEHMKVFENRVRQI
LMSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCENKIQTRIKIGLNSKM
PSRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSQQTDVGVTHFRSGMSHEEDQLIPN
LYRYIQPWESEFIDSQRVWAEYALKRQEAQAQNRRLTLEDLEDSWDRGIPRINTLFQKDR
HTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDVIQALGGVEGILEH
TLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANV
YVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKVHESVVMDLCQVLDQELDALEIE
TVQKETIHPRKSYKMNSSCADILLFAAHRWPMSKPSLVAEPKDVFDQKASNKYWVDVQLR
WGDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGLDLAYNLHSAFGNWFPGSKPLIQ
QAMNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIFSNQIIWFVDDTNVYR
VTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKRLGQLAKWKTAEEVAA
LVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKIEKFGDLIL
KATEPQMVLFNIYDDWLKSISSYTAFSRLILILRALHVNNEKAKMLLKPDKTIITEPHHI
WPSLNDDQWMKVEVALRDLILSDYAKKNNVNTSALTQSEIRDIILGAEITPPSQQRQQIA
EIEKQAKEASQLTAVTTKTTNVHGDELIVTTTSPYEQAAFGSKTDWRVRAISATNLYLRV
NHIYVNSEDIKETGYTYIMPKNILKKFICIADLRTQIAGYLYGISPPDNPQVKEIRCIAM
PPQWGTHQQVNLPAALPEHDFLNDLEPLGWMHTQPNELPQLSPQDLTSHAKILENNKQWD
GEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRVNKDTGSNPHGYLPTHYEKVQMLLSDRF
LGFYMIPDNGPWNYNFMGVKHAPSMKYGVKLGAPREYYHEDHRPTHFLEFSNLEEGERIA
EGDREDTFS
NT seq
7050 nt
NT seq
+upstream
nt +downstream
nt
atgtggaacaacggccagattgcgcctccgggtaccactggatcgtctataccgcctcca
cccgcggcgcagccctcgtacactgtgctgccgtccccagccgaagccgaggcgcggctc
gaggagaaggcgaggaaatggcagcagctcaattccaagcgatacagcgacaagcggaag
ttcgggtttgtcgagacgcaaaaggaggacatgccccccgagcacgtcaggaaaattatt
agagaccatggggacatgtcctcaaagaaatttcgtcatgataagcgtgtctatcttgga
gcccttaaatttattccacatgcagtttacaagctccttgagaatatgcccatgccgtgg
gagcaggtccgagatgtgaaggttttgtaccatatttctggggcaattacatttgtgaat
gaaataccatgggttgttgaacctatatatctggctcagtggggcacaatgtggatcatg
atgcgaagggagaagagagatcgtcggcatttcaagagaatgcggtttccaccatttgat
gatgaagaacctccattagactatgctgataatcttttagatgttgatcctcttgaacct
atccaattagaattggatgaagaagaggattctgctgtatgtacatggttttatgaccat
aagcctcttgtgaaaacaaagctgataaatggtccaagttaccggaaatggcatctctcc
cttccgatcatggcgacactgcatcggcttgcaggacagctactttctgatttaattgat
cgcaattatttctacttgtttgacatggagtcattttttacagccaaagcattgaacatg
tgtatccctggtggccctaaattcgagcctttataccgtgacatggagaaaggggatgag
gattggaacgagttcaatgatattaacaagttaataattcggtcacctctcaggacagaa
tacagaattgcattccctcatctctataataacaggcccaggaaagtaaagctctgtgtg
tatcactctcccatgatcatgtacataaaaaccgaggatccagatttacctgcattttat
tatgatcctttgatacacccaataactagcactaacaaggagcggcatgaaaagaaaagt
cgtgatgaggatgatgatgatgatgattttgtcttgccagaaggggtagaaccttttctg
aatgacacgcaactttataccgacaccacagctgctggtgtttccttattgtttgctcca
cgcccttttaacatgagatctggtcggatgagacgggcagaagatataccccttgtgtca
gagtggtataaagagcattgtcctccatcctatccagttaaagttcgggtcagctatcaa
aaactgcttaaatgcttcgtgttgaatgaactgcatcacagacctcctaaggctcaaaag
aagaagcacttatttcgatctctgcaagcaacaaagtttttccaaactacagaacttgat
tgggctgaagctggtcttcaagtttgtaagcagggctataacatgctaaatctcctcata
cataggaaaaatttgaattaccttcatcttgattataatttcaatctaaagcctgtgaag
accctcacaacaaaggagcggaagaagtcacgctttggtaatgctttccatctttgtcgt
gaaattctccgtttgacaaagcttgtcgttgatgccaatatccagttccgcttgggtaac
gtggatgccttccaactggctgatggcttgcaatatacattttctcatgttggtcaacta
actggtatgtatcgctacaagtataggcttatgcggcagatcagaatgtgcaaagacttg
aaacacttgatttactataggttcaacactggtccagttgggaaaggaccaggatgtggg
ttttgggcaccaatgtggagggtgtggttattctttcttcgtggtatagtgccacttctg
gaacggtggttagggaatttacttgctcgccaattcgaagggcgccattcaaaaggtgtg
gcaaagactgttactaagcaacgtgttgaaagccactttgatttggagcttcgtgcagct
gttatgcatgatgttctcgatgccatgccagagggcattaagcagaataaagcaagaact
atattgcagcatctcagtgaggcgtggcgatgttggaaagcaaatattccctggaaggtt
cctggtttgcccgtccccattgagaacatgattcttcgttatgtcaagtcaaaagcagac
tggtggacaaatgttgctcactacaaccgtgagcgtataaaacgaggagcaacagttgat
aaaacagtttgtcggaagaatcttgggcgactgactcggctttggttaaaagcagaacag
gaacgacaacacaactatttaaaagatggtccatatgtcacaccagaagaagcagttgcc
atttacacaacgacagtgcattggttggagtccagaaagttttctcccattccatttcct
ccattgtcatataagcatgatacaaaactacttatccttgctctggagaggttgaaagaa
tcttatagtgtggctgtgagattaaaccagcttcagagggaagagttgggtctcattgaa
caagcttatgataacccacatgaagcactgtcacgaataaagcgtcacctgctcactcag
cgtgccttcaaagaggttggcatagagtttatggatttgtacagctatctcattccagtt
tatgagattgagcctcttgagaagattacagatgcatatcttgatcaatatttatggtat
gaaggtgacaaacgccatctctttccaaactggatcaagcctgcagattcagagcctccg
ccacttttggtttataaatggtgtcagggtataaacaatttacaaggtatatgggacaca
agtgaggggcaatgcgtggtgatgcttcaaacaaagtttgagaagttctttgagaagatc
gacttgacaatgttaaacaggctcttgcgattggttcttgaccacaatattgctgattat
gtcactgcaaagaacaatgttgtgctgtcttacaaggatatgagtcacacgaattcatac
ggtcttatacgcggtctccagtttgcttcttttgtggtacagtattatggacttgtgctg
gatctcttgctccttggattgacacgaggcagtgagattgctggtcctccgcagatgcct
aatgagttcatcacttattgggacacaaaagttgagacacggcaccctattcggctgtat
tctcgatacatagacagggtccatatattgctccgcttcactcacgaagaggctcgagac
cttattcagcggtaccttaccgagcatcctgatcctaataacgaaaatatggttggatac
aacaataagaagtgctggccaagagatgccaggatgaggctcatgaaacacgatgtaaat
cttgggaggagtgttttctgggatatgaagaaccgtcttcctcgaagtatcacaacattg
gagtgggagaatagctttgtctcagtttacagcaaggataatccaaacttgctcttcagc
atgtgtggatttgaagttcggatacttcctaaaataagaatgacccaagaagcattcagt
aatacaagggatggcgtttggaatctgcagaatgaacaaaccaaagaacggactgcagtt
gctttcttgcgggtggatgatgaacacatgaaggtgtttgagaatcgtgtgaggcagatt
cttatgtcttcaggttctacaacatttacgaaaattgtcaataaatggaatactgccctg
ataggtctcatgacttatttccgtgaagccactgtacatactcaagaactgttagatttg
ctggttaaatgcgaaaataaaattcaaacccgtataaagattgggttgaactcaaagatg
cctagcaggttccctcctgtcattttttacactccaaaggaaattggaggacttggcatg
ctttccatgggtcacatattgattccacaaagtgacctccgttacagtcagcagactgat
gtcggtgtaactcactttaggagtggaatgagtcatgaagaggaccagctaattcccaat
ctttatcgatatatacagccatgggagagtgagttcatagattcacagcgtgtttgggca
gaatatgcgctgaagaggcaggaagctcaggcacaaaataggcgtctgacccttgaagat
ttggaagattcatgggacaggggaattccacgtataaatactttgtttcagaaggatcgg
cacactcttgcatatgacaaaggatggagggtgcgcactgacttcaagcaataccaagtt
ttaaagcagaaccctttctggtggacgcaccagaggcatgacggaaaactttggaacttg
aacaattatcgaactgatgtaatccaagctttgggaggtgtcgagggaattcttgagcat
accttgttcaaaggaacatactttccaacttgggaaggtctcttctgggaaaaggcatcg
ggctttgaggaatcaatgaagtataagaagctgacaaatgctcagagatctggtctcaac
caaatccctaaccgtaggttcactctttggtggtcacctacaataaatagagcgaatgtt
tacgtgggtttccaagtccagttggatctaacaggaatcttcatgcacgggaagatccct
acgttgaagatctcactgattcagatattccgtgctcatttgtggcaaaaggttcatgag
agtgttgtcatggatctttgtcaagttctggatcaggagttggatgctttggaaatcgaa
actgtacagaaggaaacaatccatccaaggaagagttacaaaatgaacagttcttgtgca
gacattcttctctttgctgctcatagatggccaatgtcaaaacctagtcttgtggctgag
ccgaaggatgtgtttgatcagaaagctagcaacaagtactgggttgacgtgcagctccgc
tggggagattatgactctcacgatattgagcgttacactcgagccaagtttatggattat
acaacagataacatgtctatatatccatctcctactggggtgatgattggcctcgatttg
gcatataacttacattctgcatttggtaattggtttcctgggtcaaagcctctcatccag
caggcaatgaataagattatgaagtcgaatccagccttatatgtcttgagggagcggata
aggaaaggtttgcaattgtattcttctgagcccactgaaccatatttgtcatctcagaac
tatggagaaatcttcagcaatcaaataatatggtttgtcgatgacactaatgtgtatcgt
gttactatccataagacatttgaaggaaatcttacaacaaaacccatcaatggtgctatc
tttatattcaatccaaggactgggcagctgtttctgaaggtcattcacacaagtgtctgg
gcaggacagaagcgtcttggtcagttggctaagtggaaaacggcagaagaagttgctgct
cttgtccggtctttacccgttgaagaacaaccaaagcaaattattgtgactcgtaaagga
atgctggatccattggaggttcacttgcttgattttcccaacatagttattaaaggaagt
gagctgcagcttcctttccaggcatgcttgaagattgagaagtttggtgacttgattttg
aaggctacagagccacaaatggttcttttcaacatttatgatgattggttgaaaagtatt
tcatcatacactgcattctcccggctcattctgatcttgcgtgcacttcatgtgaacaat
gagaaggcaaagatgttactaaagcccgacaaaacgatcattaccgagcctcaccacata
tggccttctctcaatgatgatcaatggatgaaggttgaggttgctcttagagatctcata
ctctcagattatgccaagaagaacaatgttaatacatcagctctgacacagtctgagatt
cgtgatattatacttggagccgagattaccccaccttctcaacagagacagcagattgct
gagatcgagaagcaggcaaaagaagcaagtcagctgacagcagtgacaacaaagactacc
aatgtgcatggtgatgaactgattgtcaccaccacaagtccatatgagcaagctgcattt
ggatctaaaactgattggcgtgtgagagcaatatcagcaacaaatctctatcttcgcgtc
aatcatatttatgtgaattcagaggatataaaggaaacgggatatacttatataatgcca
aaaaacattttgaagaagtttatctgcatagcagatctgcggactcaaattgctggctac
ttgtatggcataagtccccctgacaacccgcaggttaaggaaattcgctgtattgctatg
ccgccgcagtggggaacccatcagcaagttaatcttccagcagctctcccagagcatgat
ttcctgaatgatttggagcctttgggatggatgcatacgcaacctaacgaacttccccag
ttatcgccacaggatctcacaagtcatgctaagatcttggaaaacaacaagcaatgggat
ggggagaagtgcataattttgacttgcagtttcactccaggttcctgctccttaactgct
tataagttgacaccatcagggtatgaatggggacgtgttaacaaggacaccggaagtaat
cctcatggctaccttcccactcattacgagaaggtccaaatgctcctgagtgaccgcttc
cttggtttctatatgattccagataatggtccgtggaattacaacttcatgggggtgaaa
catgcacctagtatgaagtatggagttaagcttggggcaccccgtgaatattatcacgag
gaccacaggccaacccatttcctagagttcagcaacttggaggagggagagagaattgct
gaaggagatcgtgaagatacattctcgtag
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integrated database retrieval system
