Juglans regia (English walnut): 109013919
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Entry
109013919 CDS
T05245
Name
(RefSeq) pre-mRNA-processing-splicing factor 8A-like
KO
K12856
pre-mRNA-processing factor 8
Organism
jre
Juglans regia (English walnut)
Pathway
jre03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109013919
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
jre03041
]
109013919
Spliceosome [BR:
jre03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
109013919
Complex C
U5 SnRNP specific factors
109013919
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
109013919
NCBI-ProteinID:
XP_018851728
UniProt:
A0A2I4H6F2
A0A833XHT6
LinkDB
All DBs
Position
7:complement(46525406..46539082)
Genome browser
AA seq
2348 aa
AA seq
DB search
MWNNGQIAPPGTTGSSIPPPPAAQPSYTVLPSPAEAEARLEEKARKWQQLNSKRYSDKRK
FGFVETQKEDMPPEHVRKIIKDHGDMSSKKYRHDKRVYLGALKFIPHAVYKLLENMPMPW
EQVRDVKILYHISGAITFVNEIPWVVEPIYLAQWGSMWIMMRREKRDRRHFKRMRFPPFD
DEEPPLDYADNLLDVDPLEPIQLELDEEEDSAVCTWFYDHKPLVKTKLINGPSYRKWHLS
LPIMATLHRLAGQLLSDLIDRNYFYLFDMESFFTAKALNMCIPGGPKFEPLYRDMEKGDE
DWNEFNDINKLIIRSPLRTEYRIAFPHLYNNRPRKVKLCVYHTPMIMYIKTEDPDLPAFY
YDPLIHPITSTNKERHEKKSRDEEDDDDFALPEGVEPFLNDTQLYTDTTAAGVSLLFAPR
PFNMRSGRMRRAEDIPLVSEWYKEHCPPSYPVKVRVSYQKLLKCFVLNELHHRPPKAQKK
KHLFRSLQATKFFQTTELDWAEAGLQVCKQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKT
LTTKERKKSRFGNAFHLCREILRLTKLVVDANIQFRLGNVDAFQLADGLQYTFSHVGQLT
GMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPMWRVWLFFLRGIVPLLE
RWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDVLDAMPEGIKQNKARVI
LQHLSEAWRCWKANIPWKVPGLPVPIENMILRYVKSKADWWTNVAHYNRERIKRGATVDK
TVCRKNLGRLTRLWLKAEQERQHNYLKDGPYVTPEEAVAIYTTTVHWLESRKFSPIPFPP
LSYKHDTKLLILALERLKESYSVAVRLNQLQREELGLIEQAYDNPHEALSRIKRHLLTQR
AFKEVGIEFMDLYSYLIPVYEIEPLEKITDAYLDQYLWYEGDKRHLFPNWIKPADSEPPP
LLVYKWCQGLNNLQGVWDTSEGQCVVMLQTKFEKFFEKIDLTMLNRLLRLVLDHNIADYV
TAKNNVVLSYKDMSHTNSYGLIRGLQFASFVVQYYGLVLDLLLLGLTRASEIAGPPQMPN
EFITYWDTKVETRHPIRLYSRYIDRVHILFRFTHEEARDLIQRYLTEHPDPNNENMVGYN
NKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENSFVSVYSKDNPNLLFSM
CGFEVRILPKIRMTQEAFSNTRDGVWNLQNEQTKERTAVAFLRVDDEHMKVFENRVRQIL
MSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCENKIQTRIKIGLNSKMP
SRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSQQTDVGVTHFRSGMSHEEDQLIPNL
YRYIQPWESEFIDSQRVWAEYALKRQEAQAQNRRLTLEDLEDSWDRGIPRINTLFQKDRH
TLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDVIQALGGVEGILEHT
LFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVY
VGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMDLCQVLDQELDALEIET
VQKETIHPRKSYKMNSSCADILLFAAHRWPMSKPSLVAEPKDVFDQKASNKYWIDVQLRW
GDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGLDLAYNLHSAFGNWFPGSKPLLQQ
AMNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIFSNQIIWFVDDTNVYRV
TIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKRLGQLAKWKTAEEVAAL
VRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKIEKFGDLILK
ATEPQMVLFNIYDDWLKSISSYTAFSRLILILRALHVNNEKAKMLLKPDKTIITEPHHIW
PSLNDDQWMKVEVALRDLILSDYAKKNNVNTSALTQSEIRDIILGAEITPPSQQRQQIAE
IEKQAKEASQLTAVTTRTTNVHGDELIVTTTSPYEQAAFGSKTDWRVRAISATNLYLRVN
HIYVNSEDIKETGYTYIMPKNILKKFICIADLRTQIAGYLYGVSPPDNPQVKEIRCIAMP
PQWGTHQQVNLPAALPEHDFLNDLEPLGWMHTQPNELPQLSPQDLTSHAKILENNKQWDG
EKCIVLTCSFTPGSCSLTAYKLTPSGYEWGRVNKDTGSNPHGYLPTHYEKVQMLLSDRFL
GFYMIPDNGPWNYNFMGVKHAPSMKYGVKLGAPREYYHEDHRPTHFLEFSNLEEGETIAV
GDREDTFS
NT seq
7047 nt
NT seq
+upstream
nt +downstream
nt
atgtggaacaacggccagattgcgccgcctgggaccactggctcctcgataccgcctcca
cctgcggcacagccctcgtacacggtgctaccgtcgccggccgaagcagaggctcgactc
gaggagaaggcgaggaaatggcagcaactcaattcgaagcggtacagcgacaaacgcaag
tttgggtttgtcgagacgcagaaggaggacatgccacccgagcacgtcaggaaaattatc
aaagatcatggggatatgtcctcgaagaaatatcgtcatgataagcgtgtctatcttgga
gcccttaaattcattccgcatgcagtttacaagcttcttgaaaatatgcccatgccatgg
gagcaggttcgtgatgtgaagattttgtaccatatttctggggcaattacatttgtgaat
gaaataccatgggttgtagaacctatatatctggctcagtggggctcaatgtggatcatg
atgcgaagggagaagagagatcgtagacatttcaagagaatgcggtttccaccatttgat
gatgaagaacctccactagactatgctgataatcttttagacgttgatcctctggagcct
atccaattagagttggatgaagaggaggattctgctgtatgtacttggttttatgaccac
aagcctcttgtgaaaacaaagctgataaatggtccaagttaccggaaatggcatctctct
cttcctataatggcaacccttcatcggcttgcaggacagctcctttctgatttaattgat
cgcaattatttctacttgtttgacatggagtcattttttacagccaaagcattgaacatg
tgtatacctggtggccctaaatttgagcctttgtaccgtgacatggagaaaggagatgag
gattggaatgagttcaatgatattaacaagctgattattcgatcacctctcaggacagaa
tacagaattgcatttccccatctctataacaataggccccggaaagtaaagctttgtgtg
tatcacactcccatgatcatgtacataaaaactgaggatcctgatttacctgcattttac
tatgatcctttgatacacccaataactagcactaacaaggagcggcatgaaaagaaaagt
cgtgatgaggaggatgatgatgattttgccttgccggaaggagtggaaccttttctgaat
gacactcaactttataccgacaccacagctgctggtgtctccttactatttgccccacgc
ccttttaacatgcgatctggtcggatgagacgggcagaagatataccccttgtgtcagag
tggtataaagagcattgtcctccatcctatccagttaaagttcgggtcagctatcaaaaa
ttgctaaaatgctttgtgttgaatgaactgcatcacagacctcccaaggctcaaaagaag
aagcacttattccgatctttgcaagcaacaaagtttttccaaacgacagaacttgactgg
gctgaagctggtcttcaagtttgtaagcagggctataacatgctaaatctgcttatacat
aggaaaaatttgaattacctccaccttgattacaattttaacctgaagcctgtaaagacc
ctcacaacaaaagagcgaaagaaatcacgttttggtaatgctttccatctttgccgtgaa
attctgcgtttgacaaagcttgtagttgatgcaaatatccagttccgcttgggtaatgtg
gatgctttccaattggctgatggtttgcaatatacattctctcatgttggtcaactgact
gggatgtaccgatataagtacaggcttatgcggcagatcagaatgtgcaaagacttaaaa
cacttgatttattatcggttcaacactggtcctgttgggaaaggacctggatgtgggttt
tgggcaccaatgtggagggtgtggttgttctttcttcgtggtatagtgccactcctcgaa
cggtggttagggaatttacttgcgcgtcaatttgaagggcgccattcaaaaggagtggca
aagactgttactaagcaacgtgttgaaagccattttgatttggagcttcgagcagctgtt
atgcatgatgttcttgatgccatgccagagggcatcaagcagaataaagctagagttata
ttgcagcatctcagtgaggcgtggcgatgttggaaagcaaacattccctggaaggttcca
ggtttgccggtccccattgagaacatgattctacgttatgtcaaatcaaaagcagactgg
tggacaaatgttgctcactataatcgtgagcgtataaaaagaggagcaacggttgataag
acagtttgtcggaagaaccttgggagactgactcgcctttggcttaaagcagagcaggaa
cgacaacacaactatttgaaagacggcccatatgttacaccagaagaagcagttgccatt
tatacgacgacagtgcattggttggagtcaagaaagttttctcccattccattccctcca
ttgtcatataagcatgatacaaaactacttattctagctctggagaggttgaaagaatct
tacagtgtggctgtgagattaaaccagcttcagagggaagagttgggtctcattgaacaa
gcttatgataatccacatgaagcactgtcgcgaataaagcgtcacctgctcactcagcgt
gctttcaaggaggttggaatagagttcatggatttgtacagctatctcattccagtttat
gagattgagcctcttgagaagattacggatgcgtatcttgatcaatatttatggtatgaa
ggtgacaaacgccatctctttccaaactggatcaagcctgcagattcagagcctccccca
cttttggtttataaatggtgtcagggtctaaacaatttacaaggtgtatgggacacgagt
gaagggcaatgtgttgtgatgctgcagacaaagttcgagaagttctttgagaagattgac
ttgacaatgttaaacaggctcttgaggttggttcttgaccacaacatcgctgattatgtc
actgctaagaacaatgttgtgttgtcttacaaggatatgagtcacacaaactcatatggt
cttatacgtggtctccagtttgcttcttttgttgtacagtattatggacttgtgctggat
ctcttgctccttggattgactcgagccagtgagattgctggtccaccccagatgcctaat
gagttcattacttattgggacacgaaagttgagacacggcaccctattcggctgtattcc
cgatatatagacagggtccatatattgttccgcttcacccatgaagaggctcgagacctt
attcagcgatatcttactgagcatcctgatcctaacaatgaaaatatggttggatataac
aataagaagtgctggcccagagatgctagaatgaggctcatgaaacatgatgtaaatctt
gggaggagtgttttctgggatatgaagaatcgtcttcctcgaagtatcacaacattggag
tgggagaacagctttgtatcagtttacagcaaggataatccgaatttgctcttcagcatg
tgtggatttgaagttcggatacttcctaaaataagaatgacccaagaagcattcagcaat
acaagagatggggtttggaatctgcagaatgaacagaccaaagaacggactgctgttgct
ttcttgcgggttgatgatgaacacatgaaggtgtttgagaatcgtgtgaggcagattcta
atgtcttctggatctactacatttacaaaaattgtcaataaatggaatacagccctgata
ggtctcatgacttatttccgtgaagccactgtacatactcaagaactgttggatttgctg
gttaaatgtgaaaataaaatccagacccgtataaagattggattgaactcaaagatgcct
agcaggttcccgcctgtcattttctacactccaaaggaaatcggaggacttgggatgctt
tccatgggtcacatattgattccacagagtgacctccgttacagtcagcagactgacgtt
ggtgtaactcactttaggagtggaatgagtcatgaagaggaccagctaattcccaatctt
tatcgatatatacaaccatgggagagtgagttcatagattcacagcgtgtgtgggcagaa
tatgcactaaagagacaggaagctcaggcacaaaataggcgtttgaccctcgaagatttg
gaagattcatgggacaggggaattcctcggataaatactttgtttcagaaggatcgacat
actttggcatatgacaaaggatggagggtgcgaactgacttcaagcagtaccaagttcta
aaacagaaccctttctggtggacacaccagaggcatgacgggaaactttggaacttgaac
aactatcgaactgatgtcatccaagctttgggaggtgttgagggaattcttgagcatacc
ttattcaaaggaacatactttccaacttgggaaggactcttctgggaaaaggcatcaggc
tttgaggaatcaatgaagtataaaaagctgacaaatgctcagagatctggtctcaaccag
atccctaaccgtaggttcactctttggtggtcacctacaataaatagagcaaatgtttat
gtgggtttccaagtccagttggatctaactggcatcttcatgcacgggaagatccctacc
ttaaagatttcgctgattcagatattccgtgctcatttgtggcaaaagatacatgagagt
gttgtcatggatctgtgtcaagttttggatcaggagttggatgctttggaaattgaaact
gtgcagaaggaaacaatacatccaaggaagagttacaaaatgaacagctcttgtgcagac
attcttctctttgctgctcatagatggccaatgtcaaaacctagtcttgtggccgagcca
aaggatgtgtttgaccagaaagcaagcaacaagtactggatagatgtgcagctgcgttgg
ggtgattatgactctcacgatattgagcgttacacccgggccaaatttatggattacaca
acagacaacatgtctatatatccatctcctactggtgtgatgattggacttgatttggcc
tataacttgcattctgcatttggcaattggtttcctgggtcaaagcctctgctccagcag
gcgatgaataagatcatgaagtcaaatccagccttatatgtattgagggagcggataagg
aaaggtttacaattgtattcttctgagcccactgagccgtatttgtcatcccagaattat
ggagagatcttcagcaaccaaataatatggtttgttgatgacactaatgtatatcgggtt
actatccacaagacatttgaaggaaatcttacaacgaaacccatcaatggggccatcttt
atattcaatccaaggaccggacagctgtttctgaaggtcatccacacaagtgtctgggca
ggacagaagcgtcttggtcagttagccaagtggaaaacagcagaagaagttgctgctctt
gtgcggtctttgccagttgaagaacaaccgaagcaaattatagtgactcgtaaaggaatg
ctggacccattggaggttcacttgctggattttcccaacatagttattaaaggaagtgag
ctgcagcttcctttccaggcatgcttgaagattgaaaaatttggtgatctgattttgaag
gctacagagccacaaatggttcttttcaacatttatgatgattggttgaaaagtatttct
tcgtatactgcattctcccggctcattttgatcctgcgtgcacttcatgtgaataatgag
aaggcaaagatgttactaaagcccgacaaaacaatcattactgagcctcaccacatctgg
ccttctctcaatgatgatcaatggatgaaggtagaggttgctcttagagatctcatactc
tcagactatgccaagaagaacaatgtgaatacatcagctctgacacagtctgaaattcgt
gatatcatacttggtgctgagattactccaccttctcaacagagacagcagattgctgag
attgagaaacaggcaaaagaagcaagtcagctgacagcagtgacaacaaggaccaccaat
gtgcatggtgatgaactgattgtcaccaccacaagtccatatgagcaagctgcatttgga
tctaagacagattggcgtgtgagagcaatatcagcaacaaatctctatcttcgtgtcaat
catatttatgtgaattcagaggatataaaggaaacaggatatacctatattatgccaaag
aacattttgaagaagtttatctgcatagcagatctgcggactcaaattgctggctacttg
tatggtgtaagtcctcctgacaacccacaggttaaggaaatccgctgtattgcaatgcca
ccacagtggggaacccatcagcaagttaaccttccagcagctcttccagagcatgatttc
ctgaatgacttggagcctttgggatggatgcacacacaacctaatgaacttccccagtta
tcaccacaggatctcacaagtcatgctaagatcttagaaaacaacaagcaatgggatggg
gagaagtgcattgttttgacttgcagtttcactcctggttcctgctccttaactgcttat
aagctgacaccatcagggtatgagtggggacgtgtgaacaaggacactgggagcaatcct
catggctaccttcccactcattatgagaaggtccaaatgctccttagtgaccgcttcctt
ggcttctatatgattcctgataatggtccatggaattacaacttcatgggggtgaaacat
gcacctagtatgaagtatggggtcaagcttggggcaccccgtgaatattatcacgaggac
cacaggcctacgcatttcctggagtttagcaacttggaggagggagagacgattgctgtg
ggagatcgcgaagacacattctcatag
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integrated database retrieval system
