Juglans regia (English walnut): 109016774
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Entry
109016774 CDS
T05245
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
jre
Juglans regia (English walnut)
Pathway
jre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109016774
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jre03019
]
109016774
03012 Translation factors [BR:
jre03012
]
109016774
Enzymes [BR:
jre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109016774
Messenger RNA biogenesis [BR:
jre03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
109016774
Translation factors [BR:
jre03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
109016774
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
T2SSE
AAA_19
ATPase
nSTAND3
Dicer_dimer
NPHP3_N
AAA_16
PhoH
Myosin_head
Motif
Other DBs
NCBI-GeneID:
109016774
NCBI-ProteinID:
XP_018854697
UniProt:
A0A2I4HF27
A0A833SPM9
LinkDB
All DBs
Position
15:complement(15532358..15546169)
Genome browser
AA seq
1202 aa
AA seq
DB search
MPYSAIFRAYFRTNTTSSSLVMSLRPTTTVHVRVHKTLKPSLLTALTRHRPPGIRNSHVR
PYSRPRLICSAVQVDRRVRHRSLPIPFWDQQSSSYGRFAYQDESSDESDRELGSSEQQLC
TSTLDNIDGWRWKLTMLLRDKDEQEVVSREKKDRRDFEQLSVLASRMGLHSRQYAKVVVF
SKVPLPNYRSDLDDKRPQREVILPLGLQREVDGHLKAYLSKNPMRSGSFSNSLSSASSVG
NVDNDEGFYKQQEPSIPNSAAMEKIFRPKSLQLRNKQQIWQESTEGQKMLEFRRSLPAFK
EKDALLKAISENQVIVVSGETGCGKTTQLPQYILESEIEAARGAVCSIICTQPRRISAMS
VSERVAAERGEKLGESVGYKVRLEGMKGRDTRLLFCTTGILLRRLLIDRNLKGVTHVIVD
EIHERGMNEDFLLIVLKDLLTRRPELRLILMSATLNAELFSSYFGGAPTRHIPGFTHPVR
THFLENILEMTGYRLTPYNQIDDYGQEKVWKMQKQAQALRKRKSQIASAVEDALEAADFK
ECSIRTRESLSCWNPDSIGFNLIEHVLCHIVRKERPGAILVFMTGWDDINTLKDQLQAHP
LLGDPGRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVVDCGK
AKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPRCVHDAFADYQLPEL
LRTPLQSLCLQIKSLQLGSISQFLSRALQSPEPLSVQNAVDYLKVIGALDENENLTLLGR
NLSMLPVEPKLGKMLIFGAIFNCLDPIMTVVAGLSVRDPFLMPFDKKDLAESAKAQFSGR
EYSDHLALVRAYEGWKVAERQQSGYEYCWKNFLSAQTLKAIDSLRKQFFCLLKDGGLVDH
NTENCNRWSHDEHLIRAVICAGLFPGICSVVNKEKSITLKTMEDGQVLLYSNSVNAAVPK
IPYPWLVFNEKVKVNSVFLRDSTGVSDSLLLLFGGNISRGGLDGHLKMLGGYLEFFMKPA
LADTYISLKRGLEELIRMKLLDPKLDMQSHNELLLAVRLLVSEDQSNGRFVFNRQVATPS
KKKMKETLPGTLLRGGGEGGNSKNLLQTLLARAGHEAPTYKTRQLKNNQFRSTVIFNGMN
FSGQPCSSKKLAEKDAATEALLWLKGESHSTPTDIDHVSVLLKKNKKKDQKRTSIRGAAK
WG
NT seq
3609 nt
NT seq
+upstream
nt +downstream
nt
atgccctactcagccattttccgggcgtatttcagaacaaacacaacctcttcttctctt
gtcatgtctctcagacccaccaccacagttcatgtgagggtccacaaaaccctgaaacct
tccctgcttactgccttgacgaggcatcgaccacctgggattaggaactcgcatgtgcgg
ccctattcgaggccgcggctcatatgctcggcggttcaggtggaccggagggtgaggcat
aggagtcttcctatcccgttttgggaccagcagagctcgagttacggccggttcgcgtac
caggacgagtccagcgacgagtcggaccgtgagttggggtcctctgagcagcaattgtgc
acttcaactcttgataatattgatggttggagatggaagttgaccatgctgcttcgcgac
aaagatgagcaagaagtggtgtcacgggagaaaaaagatagacgtgattttgagcaactt
tcagtgttggctagcagaatgggtttacatagccgtcaatatgcaaaagttgtcgtattt
agtaaagtccctctgccaaattacagatctgacctggatgataagcggccgcagagagag
gtgatcttacctttgggattgcaaagagaagtagatggtcatctcaaagcctatctttct
aaaaatcctatgcgtagtggaagtttctcaaattccttgtcaagtgcaagcagtgttgga
aatgttgataatgatgaggggttttacaagcagcaggagccctcaataccaaatagtgct
gccatggaaaaaatcttccgaccgaaaagtttgcaattgcgaaataaacaacagatttgg
caggaatctactgaaggccaaaagatgcttgaatttcgtagaagtctccctgcatttaaa
gagaaagatgcattattaaaagccatttctgaaaatcaggtcattgttgtctcaggtgaa
actggctgcggcaaaaccacgcaacttcctcaatacatcttggaatctgaaattgaggct
gctcgtggagctgtctgtagtattatatgtactcagccaagacgcatatctgccatgtca
gtttctgaaagagttgctgcagaacgaggggagaaactgggagaatctgttggatacaaa
gttcggctggagggaatgaaagggagagacactcgccttcttttttgcaccactggaata
ttgttgaggagattacttatcgacagaaatttgaaaggtgtaactcatgttattgtcgat
gagattcatgagcgtggaatgaatgaagattttcttcttattgtcctcaaagatctcctc
actcgtagaccagaattaaggctgattttgatgagtgcaaccctaaatgctgagcttttc
tcttcgtactttggtggtgctccaacaaggcatattcctggttttacacacccagtgcgc
acacattttctggagaatatcctggaaatgacaggatatcgattgacaccctataatcaa
attgatgattatggtcaagaaaaggtgtggaaaatgcagaaacaagctcaagctcttagg
aaaaggaagagccagattgcttctgctgttgaggatgcacttgaagcagctgactttaag
gagtgcagcatacgtactcgggagtctttatcctgttggaatccggactcaattggcttt
aacctcattgagcacgtgctctgccacatagtcagaaaagaaaggcctggtgctattttg
gtttttatgactggttgggatgacataaatactttgaaggaccaactccaagctcatcct
ctcttgggtgatccgggaagggtgttgctgcttgcatgccatggatccatggcaagctct
gagcagaggctaatatttgataagcccgaagatggagtgaggaaaatagttctagctaca
aatatggctgagactagtatcaccatcaacgatgtcgtttttgtggttgattgtggaaag
gcaaaagagacatcatatgatgcactaaataacactccttgtttgctgccatcatggata
tcaaaggctgctgctcgtcaaaggaggggaagagctggacgggttcaacctggcgagtgt
taccatctctatcccagatgtgtacatgatgcttttgctgattaccaattgccagaactt
ttaaggacgccattacagtcattatgtttacaaatcaaaagtttgcaacttgggagcatt
tcacaatttttatctagggcattgcagtcaccagaacctctatcggttcaaaatgccgtg
gattacttgaaggtcattggggctttggatgagaatgaaaatctgactttgctaggacgc
aacttgtcgatgcttccagttgagccaaaacttgggaaaatgctcatatttggggctatt
ttcaactgtctagatccaatcatgaccgttgttgctggcctgagtgtcagagatccattt
ctgatgccattcgacaagaaggatcttgcagagtcagcaaaagcgcagttctctggccgt
gaatatagtgaccatcttgcacttgtccgagcttatgagggttggaaagttgctgaaaga
cagcaatctggttacgagtactgctggaaaaatttcctttctgctcaaaccctgaaagcc
attgactctcttcggaagcagtttttctgtttgctcaaggatggtggtctagttgatcac
aacactgaaaactgcaatagatggagccatgatgagcatcttatccgagcagtcatctgt
gcaggcttgtttcctggaatatgttctgttgtgaacaaagagaagtcgataacattaaaa
acaatggaggatggtcaagtacttctgtactcgaattctgtgaatgctgcggtacccaaa
attccatatccatggctggttttcaacgaaaaggtgaaagtgaattctgtattcctccgg
gactcaactggtgtgtctgattctctgctgctcttatttggagggaacatttccaggggt
ggcttagatggacacctaaaaatgttgggaggatacttggagtttttcatgaaacctgct
ttggcagatacgtatataagcttaaagcgaggacttgaagaattgatacggatgaaactt
ttggatcccaagctggacatgcagtcgcacaatgagctcctgttggctgtaagattactg
gtctcagaggaccaatccaatggtagatttgtcttcaatcgccaggtggcaacaccctca
aaaaagaagatgaaagagacactaccaggaacccttttgagaggtggaggtgagggtggt
aattcaaagaatctgctacagacattgcttgccagggcaggacatgaagcacccacctac
aagacaagacaactgaaaaacaaccagttccgttccactgtgatctttaatgggatgaat
ttttccgggcaaccttgcagcagtaagaaacttgcagaaaaagatgcagctactgaggct
ctgctgtggttgaagggtgagagccattcaactcccacagatattgatcacgtgtctgtg
cttctaaagaagaacaagaagaaggatcagaaaagaacctcaatccgtggtgctgcgaag
tggggttaa
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integrated database retrieval system
