Juglans regia (English walnut): 109019720
Help
Entry
109019720 CDS
T05245
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
jre
Juglans regia (English walnut)
Pathway
jre03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109019720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
jre03041
]
109019720
Enzymes [BR:
jre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109019720
Spliceosome [BR:
jre03041
]
Complex C
Other components
Step II factors
109019720
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
WHD_HA2
AAA_22
DEAD
HA2_C
AAA_19
nSTAND_NTPase5
ABC_tran
nSTAND3
AAA_30
AAA_16
AAA_29
Sigma54_activ_2
AAA_23
T2SSE
MMR_HSR1
SLFN-g3_helicase
NAT10_TcmA_helicase
ATPase_2
FtsK_SpoIIIE
Sigma54_activat
SRP54
DAP3
PhoH
AAA_33
Motif
Other DBs
NCBI-GeneID:
109019720
NCBI-ProteinID:
XP_035540470
UniProt:
A0A2I4HN91
LinkDB
All DBs
Position
13:9460630..9472811
Genome browser
AA seq
700 aa
AA seq
DB search
MANLPIIQFEDQIIETVERNSVVVIIGETGSGKSTQLSQMLHRRGYTKSGIVGVTQPRRV
AAVSVARRVAQELGVPLGDEVGYAIRFEDRTSERTRIKYLTDGVLLRESLSNPELNQYSV
IILDEAHERSLNTDILLGLVKRLVGVRASNLKVLITSATLDGEKVSKFFSNCPILTVPGK
LYPVEILYSNERPKSYLESSLKAALDIHVRQPEGDVLIFMTGQDDIEKLVSKLEDRVQSL
DEGSCMDAIILPLHGSLPPEMQVRVFSPPPPNCRRFIVATNIAETSLTVDGVVYVIDSGY
VKQRQYNPSTGMYSLDVVQISKVQANQRAGRAGRTRPGKCYRLYPSTVYHDEFLDVTVPE
IQRSSLAGSVLYLKSLDLSDMDILKFDFLDPPSLESLEDALKQLYLIDAINENGSITSVG
RTMAELPLEPSLSRTLMEANKCGCLFQALSVAAMLSAETSLLPGRSKNTEKKRKHNSSNL
PDGSGWGDHIQLLQIYEHWDRTNYNIGWCKDNDLQVRGMLFVKDVRKQLSQIMQKITKGS
LDVQENGRWKESELDYRNLRKALCIGFANQLAERMIHHNGYRTLGFKPQVVQVHPSSVLK
PDAEGKFPEYVVYHELIATSRPYLRNVCAVEMNWVMPILNKVKKININKLSGGTGPIREE
TEEKLSDVPKKEINIDGVPGDHENRIQAARERFLSRKAKK
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaccttccgatcattcagttcgaagatcaaatcatagagacggtggagcggaac
tcagtggtggtgataatcggagagactggctcgggaaagagcacccagctctctcagatg
ctacaccggagaggctacaccaagtctggaatcgtcggcgtcactcagcctcgccgagtt
gccgcagtctccgtggctaggcgggttgcccaggagcttggtgttccgcttggggatgaa
gtgggatatgctatccgatttgaagatagaacctcagagaggactcgtatcaaatatctt
actgatggagtcctacttcgtgagagtctatctaaccctgagcttaatcagtattcggta
atcatactggatgaagctcatgagaggagtctgaacacggatatattgctgggactagtg
aaacgcttggttggagtgcgtgcctccaatttaaaggttcttatcacttcagcaactctt
gatggtgaaaaagtatcaaaattcttttcaaattgccccatactaactgtcccagggaag
ttataccctgttgagatattgtacagcaacgagcgccctaaaagctatcttgagtcgtct
ttaaaagcagctcttgacatacacgttcggcaaccagagggtgacgtcctaatattcatg
actggacaggatgacatagagaagttggtatcaaagttggaggatcgagttcaaagtcta
gatgagggttcctgtatggatgccatcatccttccccttcatggttctttgccacctgaa
atgcaggtgcgtgtatttagtcctccacctccgaattgccgacgatttatagttgccaca
aatattgctgaaacttcgttgacggttgacggtgttgtgtatgttattgactctggttat
gtcaagcaacggcagtacaacccatcaactggcatgtattccctcgatgttgttcaaatt
agcaaagtgcaagctaatcaacgggcaggccgagcgggaagaactcgccctgggaagtgc
tatcggttatacccttccacagtttatcatgatgaatttctggatgtaacagttcctgaa
atacagcgatcttccctcgctgggagtgttctctatttgaaatcactggacctctctgat
atggatattctcaagtttgattttcttgatccgccttcacttgagtctttagaagatgct
ttgaagcagttatatctcattgatgctattaatgaaaatggctctatcacaagtgttgga
cgaacaatggctgagctcccactagaaccttcactctccagaaccttaatggaggcaaat
aagtgtggttgcttattccaggctttgagtgttgctgccatgttatcagcggaaacctca
ttgcttcctggtcgaagcaagaatactgaaaaaaagaggaaacacaattcctcaaacctt
cctgatgggtctggctggggtgatcacatccagctgcttcagatctatgagcattgggat
agaactaattataatattggttggtgcaaagacaatgacttgcaggtgcgggggatgttg
tttgtcaaagatgttcggaaacaattatctcagataatgcagaaaataactaagggatcc
ctagatgtacaggaaaatggaaggtggaaagagagtgagcttgattaccggaatttgagg
aaagctttgtgcataggttttgcaaatcagctggctgagagaatgattcatcacaatggc
tatcgaactctaggttttaagccccaagtagttcaggtgcatccgtcttcagtgctgaaa
ccagatgcagagggaaagttcccagagtatgttgtgtaccatgaactcattgcaacctca
cgcccatacttacgcaatgtatgtgctgtagagatgaattgggtcatgcccattctaaac
aaggttaagaagataaatataaacaaactgagtggtgggactggtcctattagagaagaa
actgaagaaaaactctcagacgtgccgaagaaagagattaacattgatggggtccctggt
gaccatgaaaatagaattcaggcagctagagaacgttttctttctcgtaaggcaaagaaa
tga
DBGET
integrated database retrieval system
