Juglans regia (English walnut): 109020885
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Entry
109020885 CDS
T05245
Name
(RefSeq) uncharacterized protein LOC109020885
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
jre
Juglans regia (English walnut)
Pathway
jre03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109020885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
jre03021
]
109020885
03019 Messenger RNA biogenesis [BR:
jre03019
]
109020885
Transcription machinery [BR:
jre03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
109020885
Messenger RNA biogenesis [BR:
jre03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
109020885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NUFIP1
Motif
Other DBs
NCBI-GeneID:
109020885
NCBI-ProteinID:
XP_018858954
UniProt:
A0A2I4HS34
A0A833TEP6
LinkDB
All DBs
Position
14:complement(4282169..4287572)
Genome browser
AA seq
665 aa
AA seq
DB search
MLPPYNSFPRLPNQSQQTNALSTPPSQQVMQSNPPLVNSGNLVQNTMQFQRQFGMNNSQI
QVPPSNSNAHLNPNMRPSITQPGFMNVPSHVLPLQNNHLGMPHLGSQQGLSHVGFASQNS
VCNMNPVAGFPGNGKFCNLMQNANQVNASQPPFIHNFPNLHQQLNQNMGLLNGQYGFPNM
LQNVNQLVPLQMPASSQVGPYGIPLCPPHMFGGLNQPTQAIVSQNPSIFPNMHFGPVHCN
QVGQQDNQNQQNFAPPTMNGPVAAQQLKGNSSAPLNRCPVQPPHTKNLQTPVFTWSQGNP
TDKGGSNIPSSNWKHSPNKKFTRNSKNGLSQVGSHKSQSHHMKNAKKKSGFPYEHKGKGL
SNERSGQFGIANSTNQARERKRFLSWTYSKREVQLWREARKKNYPSKSNIEKKQAAKLSD
SGGIDRDAKLRKVQLKEILAKQAELGVEVAEVPSHYLSDTEKQEHGREENKRQLNKKGRF
QNKFNKRGRRNKKDRLSKRQRLEEKVSSVVHNEDKDSSNVPSLNKRMPTLLQKLLSADIG
RDKRRLLQAFRFMVMNSFFKDWPDKPLKFPLVIVNESWCEDDAIEEKSSAVGKNAEDDDG
ESDGEDAEDDGGESEDSDDDENKDNNNADVKIDAEVKEVSSFVRREGSIGVGIEIPEEEE
GEIID
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgctacctccctacaattccttccctcgccttcccaaccaaagccagcaaactaatgct
ctctccactccaccttctcaacaggttatgcaatcaaaccctccccttgtaaattcgggt
aatttagtgcaaaacaccatgcaatttcaacgccagtttggcatgaacaattctcaaatt
caagtccccccgagtaattctaatgcccatttgaaccccaacatgcggccttccattact
caacctggtttcatgaatgtacctagccatgttcttccattgcaaaataatcatctgggt
atgccccatttgggttctcaacagggcctatcccatgtggggtttgcttcacaaaacagc
gtatgcaatatgaaccccgttgcagggtttcctggtaatggaaaattctgcaatttgatg
cagaatgcaaatcaagtcaatgcgtcgcagcctccttttatccataattttccaaattta
catcaacaactcaatcaaaatatgggtttgctgaatgggcagtatggttttccaaatatg
ttgcaaaatgtgaaccaacttgtgcccttgcaaatgccagcttcttctcaagttggtcct
tacggtatccctttatgccctccacatatgtttggtggcctcaatcaaccaacccaggca
atagtttctcaaaatccttctatttttccgaatatgcattttggtcctgtacattgtaat
caggttgggcaacaagataaccagaatcagcaaaactttgctccacctacaatgaatgga
cctgttgcagctcagcaattgaaagggaactcgtccgcaccacttaatcgatgtccggtt
caaccaccccatactaaaaacttgcaaactcctgttttcacatggtcacagggcaatcct
actgataagggtgggagtaatattccgagctccaactggaaacattcacccaacaaaaaa
ttcacaaggaattcaaaaaatggactctctcaagtgggatctcacaagtctcagtctcat
catatgaaaaatgcaaagaaaaagtctgggtttccttacgaacacaagggaaaaggactg
agcaatgagaggtctggacaatttggtatagctaattctaccaaccaagccagggagcga
aagagatttctttcttggacctactcaaaacgagaagtccagctgtggcgtgaagcacga
aagaagaattacccatcaaaatccaacatagagaagaagcaggccgcaaagctatcagac
tctgggggcattgatagagatgccaaactacgaaaagtgcaactcaaggagattttagca
aagcaagctgaattgggagttgaagttgcagaggtaccatcccactatctgtcagataca
gagaagcaagagcatggaagggaagagaacaaaaggcagttgaataagaaggggagattc
caaaacaagtttaataaaaggggaagacgcaacaaaaaagatcggctttctaagaggcag
aggctagaggagaaggtttcatctgttgttcacaatgaagacaaggattcatctaacgtc
ccttctttgaacaagagaatgccaacgctactgcagaagcttctgagtgcagatataggt
agagataaacgccgcttgttgcaggcttttaggttcatggtgatgaactctttcttcaaa
gattggccagataagccactcaaatttcctttggtaatagtgaatgaaagttggtgtgag
gatgatgcaattgaagagaaatcatcagctgtgggtaaaaatgctgaagatgatgatggt
gagagtgatggtgaagatgctgaagatgatggtggtgagagtgaagatagtgatgacgat
gaaaacaaagacaacaacaatgctgatgtaaaaattgatgcagaagtgaaagaagtgtcc
agctttgttaggagagaaggtagtattggtgtgggaattgagattcccgaggaagaagag
ggtgaaatcattgactag
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