Juglans regia (English walnut): 109021135
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Entry
109021135 CDS
T05245
Name
(RefSeq) phytochrome A1
KO
K12120
phytochrome A
Organism
jre
Juglans regia (English walnut)
Pathway
jre04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
109021135
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Gene cluster
GFIT
Motif
Pfam:
PHY
PAS
PAS_2
GAF
HATPase_c
PAS_4
PAS_9
HisKA
PAS_8
Yop-YscD_ppl_3rd
Motif
Other DBs
NCBI-GeneID:
109021135
NCBI-ProteinID:
XP_018859238
UniProt:
A0A2I4HSW5
A0A833X7D1
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Position
8:20862250..20870302
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AA seq
1124 aa
AA seq
DB search
MSSSRPSHSSSNSGHSRHSARIIAQTTVDAKLHADFEVSGDSFDYSSSVRVTSSVSGDQQ
PRSSKVTTAYLHHIQKGKLIQPFGCLLALDEKTFKVIAYSENAPDMLTMVSHAVPSVGEH
PVLGIGTDVRTIFTAPSASALQKALGFWEVSLLNPILVHCKTSGKPFYAIVHRVTGSLII
DFEPVKPYEVPMTAAGALQSYKLAAKAISRLQSLPSGRMERVCDTMVQEVFELTGYDRVM
AYKFHDDDHGEVVSEITKPGLEPYLGLHYPATDIPQAARFLFMKNKIRMIVDCHAGHVKV
LQDEKLPFDLTLCGSTLRAPHSCHSQYMENMNSIASLVMAVVVNDAEEEGDSSNTVQPQK
RKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELENQIVEKNILRTQTLLC
DLLMRDAPLGIVSQSPNIMDLVKCDGAALLYKSKIWRLGVTPSDFHLHDISSWLSECHMD
STGLSTDSLYDAGFPGALALEDVVCGMAAVRITSNDMIFWFRSPTAAEIRWGGAKHELGE
KDDGTRMHPRSSFKAFLEVVKTRSVPWKDYEMDAIHSLQIILRNAFKDIEIKDTGTNAIH
AKLSDLKIEGMQELEAVTSEMVRLIETARVPILAVDVDGLINGWNTKIAELTGLSVDKAI
GMHLLTLVEDSSNDTVERMLSLALQGKEEQNIQFEIKTHGSKSDSDPISLVVNACASRDL
RDNVVGVCFVAHDITGQKIVMDKFTRIEGDYKAIVQNPSPLIPPIFGSDEFGWCSEWNPA
MTKLSGWTREDVIDKMLLGEVFGTQMACCRLKNQEAFVNLGVVLNNAMTGQESEKVSFGF
FAHSGKYVECLLCVSKKLDREGAVTGVFCFLQLASQELQRTLHVQRLSEQTALKRLKALA
YIKRQIRNPLSGIIFSQKMMEGTELGVEQRQLLHTTAQCQRQLSKILDDSDLDSIIDGYL
DLEMVEFRLDEVLIASISQALSESNAKGIRLVNDVAEEIVNETLYGDCLRLQQVLADFLL
ISVNYMTTGGQLIVTGSLTKDQLGQSVHLAHLELRITHPGGGVPEELLNQMFGSDGDASE
EGMSLFISRKLLKLMNGDVRYMREAGKSTFIISVELAVAHKLKT
NT seq
3375 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcttcaaggcccagccactcatccagcaactcggggcactcaagacacagcgct
aggattattgctcagaccactgttgatgcaaagctccatgcagattttgaggtttcaggt
gattcctttgattactcaagctctgtgcgggttaccagttcagttagtggagatcaacaa
cccaggtccagcaaagtaaccacagcttacctccatcacatacagaaaggcaagctgatc
caaccatttggttgcttgctggccttagatgagaaaactttcaaggtcattgcatacagt
gagaatgcccctgatatgctgaccatggtcagtcatgcagtcccaagcgtcggggagcac
ccagttcttggcattgggactgatgtaagaactatcttcactgcccctagtgcctctgca
ttgcaaaaggccctaggattttgggaggtttctctcttgaaccccatcttagtccattgc
aagacatctgggaagcccttttatgcaattgtgcatcgggtgacaggtagtttgatcatt
gattttgagccagtgaagccttacgaagtccccatgactgctgcaggagccctgcaatca
tacaagcttgcagccaaagcaattagccgattgcagtccttgccaagtggcagaatggaa
agggtttgtgatacaatggttcaagaggtttttgagctcactggttatgatagggtgatg
gcatataaatttcatgatgatgatcatggggaagtggtctctgagatcacaaaacctggc
ctagagccatatctgggtttgcattatccagccactgatatacctcaggctgcacgcttc
ttgtttatgaagaataagattcgtatgattgttgattgtcatgcaggacatgtgaaggtg
cttcaagatgagaagcttccatttgatctgacgttgtgtggttcaaccttaagggcacca
cacagttgccattcacagtacatggagaacatgaattccattgcttctctagttatggca
gttgtggttaatgatgcagaagaagagggagacagctctaacactgtgcagccacaaaag
agaaaaagactctggggtttggttgtatgccataacacaactcctaggtttgttccattc
cctcttaggtatgcctgtgagtttctcgctcaagtatttgccatccatgtgaataaggaa
ttggagttagaaaaccaaattgttgagaagaacatcttgcgtacccaaacgctcttgtgt
gatttgttgatgcgagatgcgccattgggaattgtttcccagagcccaaatataatggat
cttgtgaagtgtgatggggctgctttattatacaagagcaagatatggagattgggagta
actccaagtgatttccacctgcatgacatatcctcatggctttcggagtgccatatggat
tcaacaggtttgagtacagatagcttgtatgacgctggattccctggggctcttgctctt
gaggatgtagtatgtggaatggcagctgtgaggataacttccaatgacatgattttctgg
tttcgctcccctactgctgcagaaattcgatggggtggtgcaaagcatgaacttggagag
aaagatgatggtacaaggatgcacccaagatcatcattcaaggctttccttgaagtcgtg
aagacaaggagtgtaccctggaaggattatgaaatggatgcaatccattctttgcagatt
atcctgaggaatgcattcaaagatattgaaataaaggatacaggcaccaatgcaatccat
gcaaagctcagtgacctcaaaattgaagggatgcaagaactggaagcagtgacaagtgag
atggtccgtttaattgaaacagccagagtgccaattctggctgtcgatgttgatgggctc
attaatggatggaatacaaagattgcagagttaacaggtctttctgttgataaagcaatt
ggaatgcatttgctcacactcgtggaagattcttcaaatgatacagttgaaaggatgttg
tccttggcactgcagggcaaagaagagcagaacattcaatttgagatcaaaacgcatggt
tccaagagtgattctgatcccatcagcttagttgtgaatgcttgtgcaagtagggatctt
cgagataatgttgtgggggtttgttttgtggcccatgatatcactggtcagaagatagta
atggacaagttcactcggattgaaggtgattacaaagctatcgtacaaaacccaagtcct
ttgattcccccaatatttggttcagatgaatttggctggtgttctgaatggaatccagca
atgacaaagttgagtgggtggacacgagaggacgtcatagataaaatgcttttgggggag
gtttttgggacacaaatggcatgctgccgtctcaagaatcaagaagcttttgtcaatctt
ggagtggtacttaataatgcaatgaccggtcaggaatctgaaaaagtctcttttggtttc
tttgctcacagtggaaagtatgtagaatgcctgctatgtgtgagtaagaaattggacaga
gagggtgctgtcactggggtcttttgcttcttgcagcttgctagccaagagctgcaacga
acacttcatgtccaacgtttatcagagcaaactgccttgaagagattgaaagcattggct
tatataaaaaggcagatacgaaatccgctttctgggattatattttctcagaaaatgatg
gagggtaccgagttaggagttgaacaaagacagcttctgcatactactgcccagtgccag
cgccagctcagcaagattcttgacgactcagatcttgatagcatcattgatggatacttg
gatcttgaaatggttgagtttaggctggatgaagttctgattgcctctataagtcaagcc
ttgtcagagagcaacgcaaagggaatccgattggtcaatgatgtggcagaggagattgtg
aatgaaaccctctatggtgactgtcttaggcttcaacaggttttagctgatttcttgctg
atatcagtcaattatatgacaactggaggtcagcttatcgttacaggcagtttgaccaaa
gatcagttagggcaatccgttcatcttgcccatcttgagctcaggataacacatccaggt
ggaggggtaccagaagaattgctgaaccagatgtttggaagtgatggagatgcatctgag
gagggaatgagcctgttcattagcagaaagctattaaagctcatgaatggagatgtacgg
tatatgagggaagcaggcaaatcaaccttcatcatatccgttgaacttgctgtagcacat
aagttgaagacctaa
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