Juglans regia (English walnut): 109021886
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Entry
109021886 CDS
T05245
Name
(RefSeq) SWI/SNF complex component SNF12 homolog
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
jre
Juglans regia (English walnut)
Pathway
jre03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
109021886
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
jre03021
]
109021886
03036 Chromosome and associated proteins [BR:
jre03036
]
109021886
Transcription machinery [BR:
jre03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
109021886
Chromosome and associated proteins [BR:
jre03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
109021886
PBAF complex
109021886
GBAF(ncBAF) complex
109021886
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
ANIS5_cation-bd
YEATS
Motif
Other DBs
NCBI-GeneID:
109021886
NCBI-ProteinID:
XP_018860164
UniProt:
A0A2I4HVJ8
A0A833YB52
LinkDB
All DBs
Position
1:4444727..4447574
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AA seq
543 aa
AA seq
DB search
MSVNNNNPPKNIGASSSPFGNAGMPTNPAFAQSQAQIAAGFQSQFQLSQVQAIAQAQSKA
AAHAQAQAAHAQAQAQVAHFQAQLQAQGLSLNQSHTAGIGNLGASSPSMSTPGNSSAKRM
PPKTPIRPLGVSPANTVSPLKTMELSSAARRKKQKLPEKQLQDKVAAILPESALYTQLLE
FEARVDAALVRKKVDIQEALKNPTCVQKTLRIYVFNTHANQIRTIPKKPNAEPPTWTLKI
VGRILEDGVDPDQPGVVQKSNPSYPKFSSFFKRVTISLDQRLYPDNHIIMWENARSPAPH
EGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSPALVEVLGIEVDTRPRIIAAIWHYVKARK
LQNPGDPSFFNCDPPLQRVFGEERMKFTMVSQKISQHLFPPQPIHLEHKIKLLGNTPAGT
ACYDVLVDVPFPILRELSALLANAEKNKEVDTCDEAICTAIRKIHEHRRRRAFFLGFSQS
PVEFINALIESQSRDLKLVAGEASRSSEKERHSEFFNQPWVEDAVIRYLNRRPVAGSDVP
GST
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
atgtctgttaacaataataacccgcccaagaacattggggcctcttcctcaccctttggc
aatgccggtatgcccacaaaccctgcgtttgcgcaatcacaagcccaaattgcggctggc
tttcagagtcagtttcagctgtcccaagtgcaggctattgcacaggcacagtcgaaagct
gctgctcacgcccaagctcaagcggctcatgctcaagcacaagcacaagtcgctcacttc
caagctcagttacaagctcaagggctttcgctcaaccagagccatacagctggcattggt
aatttgggggcatcatcaccctccatgtctacacctggtaattcaagtgctaagcggatg
ccgccaaaaaccccgatccgccctcttggcgtttcccctgccaacacggtgtcccctttg
aaaacgatggaactgtcatctgctgcacggagaaagaaacagaagcttcccgagaagcag
cttcaagataaagtggcagcgattcttcctgagtctgctctgtacacccagcttcttgag
tttgaggcccgcgtcgatgctgctctggtaagaaagaaagttgacattcaagaggctctt
aaaaatcctacctgtgtgcagaaaaccctccgtatttatgttttcaacactcatgcaaac
cagattcgcaccattccaaagaagccaaatgccgagccacctacctggacgcttaagata
gttggaaggattttggaagatggggtggatcctgatcagcctggagtggtccaaaagtcg
aacccttcatacccgaagttctcatcttttttcaagagagtaaccatttccttggaccag
agactatatcctgacaatcatatcattatgtgggagaatgctcgatcgcccgcccctcac
gaggggtttgaggtgaagaggaaaggggataaagaatttactgtgaatatacggttggaa
atgaactacgtgcctgagaagttcaagctttcaccagctttggtggaagttcttggtatt
gaagttgatacccgcccaagaattatagctgcaatctggcattatgtaaaggctaggaaa
ttgcagaatccaggtgacccatctttctttaattgcgatccacctcttcaaagagttttt
ggggaagaaaggatgaaattcaccatggtttctcaaaagatatcacagcatttgttcccc
ccacaacctatacatttggagcataagatcaagcttttggggaatacccctgccggaact
gcatgttatgatgtgttggttgatgtgccttttcctattctgagggaattgtctgctctt
ttggccaacgcagagaagaacaaagaagttgacacctgtgatgaagcaatatgtactgct
ataagaaaaattcatgagcaccgccgaaggcgggcattcttccttggtttcagtcaatca
cctgtggaattcatcaatgcactaatcgaatcacaaagcagggatttgaagcttgtagct
ggagaagcaagtcgtagttccgaaaaagagcgccattcagaattcttcaaccaaccctgg
gttgaggatgcagttatccgttatttgaatcgcaggccagtagcaggaagcgacgttcct
ggaagcacgtga
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