Juglans regia (English walnut): 109021942
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Entry
109021942 CDS
T05245
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
jre
Juglans regia (English walnut)
Pathway
jre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109021942
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jre03019
]
109021942
03012 Translation factors [BR:
jre03012
]
109021942
Enzymes [BR:
jre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109021942
Messenger RNA biogenesis [BR:
jre03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
109021942
Translation factors [BR:
jre03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
109021942
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
R3H
DEAD
HA2_C
HA2_N
AAA_22
Ank_2
nSTAND3
ATPase
AAA_19
Ank_5
ABC_tran
AAA_25
AAA_7
NACHT
Rad17
AAA_16
AAA_23
Motif
Other DBs
NCBI-GeneID:
109021942
NCBI-ProteinID:
XP_018860232
UniProt:
A0A2I4HVT2
LinkDB
All DBs
Position
1:complement(31300305..31327239)
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AA seq
1238 aa
AA seq
DB search
MAKKRQKKGDQNAKSAEAKRLIIAEATTIRISQQLRKFHESKDEVYMFEENLSNHERAVV
HVLCRKMGMTSKSSGRGGQRRVSIYKTKKKVDTTKGLESLPYLTFSEEAKLVLQDLFIQY
PPDDGKIDYGMVGKQAEKIDKTRQRKDDIFCKPSMSTAEIAKKVKLLASKMEKEGYLKQV
TEERTKLPIASFKDVISSTIESHQVVLISGETGCGKTTQVPQFLLDYKWGKGEACKIVCT
QPRRISATSVAERICYERGGNVGDDIGYKIRLESKGGRNSSIVFCTNGVLLRVLISKGAG
RSKRELGMKSAKQDLSDLTHIIVDEIHERDRYSDFMLAILRDMLPLYPHLRLILMSATLD
AERFSQYFGGCPIIRVPGFTYPVKTYYLEDVLAILKSKELNHLDNTLSSVPIEDTLLTEQ
DKLALDEAINLAWSNDEFDPILDLLSSEGTSKVLNYQHSLTGFTPLMVFSGKGRVADICM
LLSFGAECHLRAKDGSTALEWAERENQREAAEILKKHMESAVSNSIEEQQLLDKYLGTIN
PELIDVVLIEQLIKKICFDSQDGAILVFLPGWEDINRTREKLIAMPFFKNTSKFMIICLH
SMIPSAEQKKVFKRAPHGCRKIVLATNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVST
LQSSWVSKASAKQREGRAGRCQPGICYHLYSKLRAASFPEFQLPEIKRIPIEELCLQVKL
LDPNCKIEDFLQKTLDPPVFETIRNAIIVLQDIGALSIDEKLTELGEKLGSLPVHPLTSK
MLFFSILMNCLEPALTLACASDYRDPFTIPMLPKDRKRADAAKTELASLYGGHSDQLAVI
AAFECWKNAKQRGQEARFCSEYFVSKSTMNMLSGMRKQLQNELIRNGFIADDISSCSLNA
HDPGILHAVLVAGLYPMVGRLRPPHKSGKRLVETAGGDKVRLHPHSTNFKLSSRKTDDCP
LIIYDEITRGDGGMVIRNCTVAAPLPLLLLATEIAVAPAKDDDNDDEDDDDDEEDSDDEE
SDEGGMEIENRSGGQHEEKIMSSPDNSVTVIVDRWLFFGSTALDVAQIYCLRERLSAAVL
FKVTHPRTVLPPLLGASMHAVANILSFDGLSGISIPLEPVDSLTSMVNATEINKSAPGKR
RMMVQNSNEHLRSLMGHGTHRKSPSRHPNSAIPKLKGTTNLGDFSSERVWSPRNLAVQNM
YEKPALRGPISDGNGFGMFHKHGPRGDSLKRQRENESR
NT seq
3717 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagaagagacagaagaaaggagaccaaaatgctaaatcggctgaagcgaaaagg
cttatcattgccgaagccacaactattcgcatatcccaacaactgcggaagttccatgaa
tcgaaagatgaagtttacatgtttgaagaaaacctgtcaaaccatgaacgtgcagtagtg
catgtattatgcaggaaaatgggtatgacatccaagagttcagggcgtggcggccaacga
agggtttctatttacaaaactaaaaagaaagttgacaccacaaagggtttggagagtcta
ccatatttgacattttcagaagaggcgaaattggttttgcaggatttgtttattcaatac
ccacctgatgatggaaagattgactatggaatggttgggaaacaagctgaaaagattgat
aaaacaagacaaaggaaagatgatattttctgcaaaccttcaatgagtacagcagaaatt
gcgaagaaagtgaagttacttgcttccaaaatggagaaggaaggatatttgaagcaggtc
actgaagagaggactaagctcccaattgcatccttcaaggatgtcatttcatcaacaatt
gaatctcaccaggtagttctcatatctggtgagactggttgtggaaagaccacacaggtc
ccccaatttcttctagattataagtggggtaagggcgaggcttgtaaaattgtttgtact
caacctcgacgtatctcagcaacatcagttgctgagagaatctgttacgaaagaggaggg
aatgttggagatgatattggatacaagatacggttggaaagcaaaggtggaaggaactca
tcaattgttttctgcacaaatggggttctgttgagggtgttaatttctaaaggtgctggt
aggtcaaagagagagcttggaatgaaatctgcaaagcaagatctttctgatttaactcac
attattgtggatgaaattcatgaaagggatcgctactctgattttatgttggcaattctg
agagacatgcttcctttatatcctcatctgcgtttgatactaatgagtgctactcttgat
gctgaacgtttttcgcaatattttggtggctgcccaatcatccgtgtgcctgggttcact
tatcctgttaaaacttattatttagaggatgtacttgctatcctaaaatcgaaggaactt
aatcatctcgataataccttatcaagtgtccctattgaggacacactgttgacagagcaa
gataagcttgctttagatgaagctattaatctggcttggtcaaatgatgagtttgatccg
atcctagatttgctttcttctgagggaacttcaaaagtgttgaattaccagcattctttg
actggctttacaccattgatggtattttctggaaagggtagagtggctgatatttgcatg
ctcctatcttttggggcagaatgccatttacgggccaaggatggatctactgcattggag
tgggctgaacgggaaaaccaaagagaagctgctgaaatacttaaaaaacacatggaaagt
gccgtttccaactccattgaagaacaacaattacttgataagtatctaggaacaatcaat
cctgaacttattgatgttgttcttatagagcagttgattaaaaaaatatgttttgattca
caagatggagctatccttgttttcctaccaggatgggaggacataaatagaaccagggag
aaattaattgcaatgccatttttcaaaaatacttccaagtttatgataatatgtcttcat
tctatgattccatctgctgagcaaaagaaggtttttaaacgtgctcctcacggttgccgg
aaaattgttctagcaaccaatattgccgagactgcaattaccattgatgatgttgtttat
gttatagacagtggtcgtatgaaggaaaaaagttatgatccttataataatgtatcaaca
cttcaatcttcttgggtctcaaaagcaagtgccaaacaaagagaaggacgtgcaggtcga
tgtcaaccaggaatatgttatcatctctattcaaagctccgagcagcatcttttccagag
tttcaacttcctgaaattaagagaattccaattgaggaattatgtctgcaggtgaaattg
ttagatccaaattgcaagatagaagatttcttgcagaagacattagatcctccagttttt
gagaccatacgaaatgcaataattgttcttcaagatattggagccttgtcaattgatgaa
aagttgactgaacttggggaaaagctaggttctctacctgttcatcctttgacgagcaag
atgcttttcttttctatattgatgaactgccttgagccagccttgactctggcatgtgcc
tctgactatagagatccatttactattcccatgttaccaaaagacaggaagagagctgat
gctgctaagactgagcttgcatcattatatggagggcacagtgatcagctagcagtaata
gctgcatttgagtgctggaagaatgcaaagcaaagaggtcaagaggcacggttctgttct
gagtactttgtctctaaaagcacaatgaatatgttgtctggtatgcgtaagcagcttcaa
aatgaactaattcggaatgggtttattgctgatgatatttcaagttgtagcttgaatgca
catgacccaggtatactccatgcagtccttgtggctggtttgtatcctatggttggaaga
ttgcgtccacctcataaaagtggaaaacgacttgtggagaccgccggcggtgataaagtt
cgtttgcatcctcattccactaattttaagttatcatcaaggaaaactgatgattgccct
ttgataatatatgatgagataacacgtggggatggaggtatggtcataaggaactgtact
gtggctgcaccactcccgttgctattgcttgcaacagagattgctgtcgctcctgcaaag
gatgatgataatgatgatgaagacgacgacgacgatgaagaagatagtgatgatgaagaa
agtgatgaaggtgggatggagatcgagaatcggtcaggtggacaacatgaagaaaagatc
atgtcatctcctgataattcagttactgtcattgtggatcggtggcttttttttgggtca
acagcacttgatgttgctcaaatttactgcttgagggagcgattatcagcagcagtctta
ttcaaggtaacacatccaaggactgttctgcctcctcttctaggggcctctatgcatgct
gtagccaatatcctatcttttgacgggctgtccggaatatcaataccactagaacctgtg
gactcactgacttcaatggtaaatgctactgagattaacaagtctgccccagggaagagg
agaatgatggtacagaattcaaatgaacacctccgatcgcttatgggacacggcacgcac
cggaaatcaccttcccgtcatcccaatagtgcaattcctaaattaaagggaacaacaaac
ttgggtgatttttcaagtgagagagtttggtcaccccgtaatttggctgtccagaacatg
tatgagaaacctgcattgcggggtcctatttctgatgggaatggttttggaatgtttcac
aaacatggtccaaggggagattctcttaagcggcaacgtgagaatgaatctagataa
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