Juglans regia (English walnut): 109021994
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Entry
109021994 CDS
T05245
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
jre
Juglans regia (English walnut)
Pathway
jre03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109021994
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jre03019
]
109021994
Messenger RNA biogenesis [BR:
jre03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
109021994
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
GTP_EFTU_D4
MMR_HSR1
Zn_ribbon_RanBP
RUBY_RBDX
Mg_chelatase
Motif
Other DBs
NCBI-GeneID:
109021994
NCBI-ProteinID:
XP_035548960
UniProt:
A0A6P9EN47
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All DBs
Position
8:1933988..1946944
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AA seq
684 aa
AA seq
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MPRKVSYGVDYDEEYDDYEDYDVDYDLDVEDNGNVPQSKQETIKRGIWRCSICTYDNDES
LSVCDICGVLRNPLINYGPGSDKKTARFKFDAPSPDDLVFDGLRSSKKVSKANSTDLKSS
RVSSSIDQNIGVVGIKSSADRADISSSSMPKGRHHSEDGSNYSKNGTGNMPSSDKSSVSP
AALTIKGRPDAIDESSSSSMSRGNPRSLTNNLNKMALDAGSGLSKNGNARVIRSNTEYKP
ENWMLPGQAEDTLNQLNLAIVGHVDSGKSTLSGRLLHLLGRISQKEMHKNEKEAKLQGKG
SFAYAWALDESTEERERGITMTVAVAYFDSKKYHVVVLDSPGHKDFVPNMISGAAQADAA
VLVIDASVGSFEVGMDSAKGQTREHAQLIRSFGVDQIIVAVNKMDAVDYSKERFDLIKQR
LGTFLRSCGFRDSSIILVPLSAMENQNLVAAPSDVRLLSWYHGPYLLDAIDSLQPPMRDF
SKPVLMPICDVLKLSSLGQVSACGKLEAGALRSGSKVLVMPSGNVGIVRSLERDSQACSF
ARAGDNVAVSLQGIDGSLVTAGGVLCHPDFPVAVAKHLELKVLVLDVTTPILIGSQLEFH
VHHAKEAARVVRMLSLLDPKTGKVTKKAPRCLTAKQTAVVEVALQGPVCVEEFSSCRALG
RVFLRALGRTIAVGIVTRIIEEQD
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgtaaagtgagttatggagttgattatgatgaagaatatgatgactatgaagat
tacgatgttgattatgatttagatgtagaagataatggcaacgtacctcagtcgaagcaa
gaaactattaagcgtgggatttggcgttgctccatctgcacgtatgataatgatgagagt
ttgtctgtatgtgatatttgtggggttcttcgtaatcctttgatcaattatggccccggc
agtgataagaaaacagctcgtttcaagttcgatgctccctccccagatgatttggttttt
gatggactgcgttcctccaaaaaggtttcaaaagccaactctaccgacttgaaatcttca
agagtttcctcaagcatagatcagaatattggtgtagttggcataaaatcaagtgctgac
agggcagatatctcatcttcatcgatgccaaaaggcagacaccatagcgaggatgggagc
aattattcaaagaatggtacaggcaacatgccatcgagtgataaaagctctgttagccca
gctgcattgactataaaaggcagacctgatgcaatagatgagagcagtagttcttcaatg
agtaggggcaacccacgaagtcttaccaataatttgaacaaaatggctttagatgctgga
tctggattgtcaaaaaatggtaatgccagagtgattcgttcaaatacagaatataaacct
gaaaattggatgctccctggccaagctgaagatacattgaatcaactgaatcttgcaatt
gttggtcatgttgattctggaaaatcaacactctctggtagactactacaccttttaggg
cgaatatcacaaaaagagatgcacaaaaatgaaaaggaggctaagttacagggcaagggc
tcctttgcttatgcttgggctttggatgagagcactgaagaaagggaaaggggaataact
atgacagtggctgttgcatattttgattccaaaaagtatcatgttgttgtgcttgactca
ccaggccataaggattttgtaccaaacatgatatctggggcagcacaagcggatgctgca
gttcttgtcatagatgcctcagttggttcatttgaggttggcatggacagtgctaagggt
caaacacgggagcatgcacaacttatcagaagttttggtgttgatcaaattatagttgca
gttaacaaaatggatgctgttgattactctaaggaacgtttcgatttgattaaacagcga
cttggaacatttctccgttcttgtggttttagagattcttctataatattggtcccgttg
agtgccatggaaaatcaaaatttggtggcagctccttctgatgttcgtctgctgtcctgg
tatcatggaccttatctgctggatgcaattgattccctccaacctcctatgagagatttc
tcaaagcctgtacttatgcccatatgtgatgttcttaaattgtcttcactagggcaggtg
tctgcctgtggtaaactagaagctggagctctccgaagtggatccaaggttctagttatg
ccatcaggaaatgtagggatagtgcgttccttagaacgggattctcaggcttgttccttt
gcaagagctggtgacaacgtggctgttagtctgcaaggcattgatgggagccttgtgacg
gcagggggcgtgctatgtcaccctgattttccagttgccgttgcaaaacatttggaattg
aaagtccttgttttggatgttaccaccccaattttaattggctcccagttggaatttcac
gtgcaccatgcaaaggaagctgcaagagtggtcagaatgttgtctttacttgatccaaag
actggcaaggtgacaaagaaggcacctcgctgtcttaccgccaagcagactgctgttgtt
gaggtggctttgcaagggcccgtgtgcgtagaagagttttcaagttgtagagctcttggt
agagtgtttctaagagcattaggaagaacaattgctgtcgggatcgtaacccgaataatt
gaggagcaggattag
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