Janthinobacterium rivuli: P9875_02970
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Entry
P9875_02970 CDS
T09016
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
jri
Janthinobacterium rivuli
Pathway
jri03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
jri00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
P9875_02970 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
jri03021
]
P9875_02970 (rpoC)
03400 DNA repair and recombination proteins [BR:
jri03400
]
P9875_02970 (rpoC)
Enzymes [BR:
jri01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
P9875_02970 (rpoC)
Transcription machinery [BR:
jri03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
P9875_02970 (rpoC)
DNA repair and recombination proteins [BR:
jri03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
P9875_02970 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
PYNP_C
Myosin_VII_N
Motif
Other DBs
NCBI-ProteinID:
WFR80155
UniProt:
A0ABY8I5H3
LinkDB
All DBs
Position
666343..670584
Genome browser
AA seq
1413 aa
AA seq
DB search
MKALLDLFKQVQTNETFDAIKIGLASPEKIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPTAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVTDPGMTPLKKCQIMSEDDYAAKYEEYGDDFTAFM
GAEGIRELLRSIDIHRDAETLRVELKESKSEAKIKKYAKRLKVLEAFQRSGIKPDWMIME
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPEIITRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRPLKSLAEMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPQ
LKLHQCGLPKLMALELFKPFIFNKLELMGLATTIKAAKKLVEIQEPVVWDILEDVIREHP
IMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSIEAQMEA
RTLMLASNNILFPSNGEPSIVPSQDIVLGLYYATREAINAKNEGMMFPDVSEVIRAYDNK
EVELTTRVTVRITEYPKNAETGEFEKTVTRYETTIGRAILSEILPKGLPFSVLNRALKKK
EISKLINTSFRKCGLRATVVFADKLMQSGFRLATRAGISICVDDMLVPPQKVTLIATAES
EVKQIEQQYASGLVTAGERYNKVVDIWGKTSDEVGKAMMDQLKVEDVIRRDGTKSTQESF
NAIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVTQDLVVIEDDCGTMNGAVMKALVEGGEVIEPLRDRI
LGRVVVHDVVNPETQETLYEAGTLMDEDMVEEIERLSIDEVKVRTPLTCDTRFGLCAKCY
GRDLGRGMLVNAGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSNGTIR
FTATMRYVTNGKGAQIVISRSGEVLITDDHGRERERHKVPYGATLIVKDGMVIKAGTALA
TWDPLTRPIITEYAGQVRFENVEEGVTVARQVDEVTGLSTLVAIDAKRRGSLTKTLRPQV
KLINDANEEVKIAGTEHSVAIGFQVGALIMVKDGQQVSVGEVLARIPTESQKTRDITGGL
PRVAELFEARSPKDAGMLAEVTGTVAFGKETKGKQRLEITDMDGNKHEFLITKDKQVLVH
DGQVVNKGEMIVDGPADPQDILRLLGIEALARYIVDEVQDVYRLQGVKINDKHIEVIVRQ
MLRRVQIVNAGDTNYIVGEQVERSELLDENDRMAVENKIPATYENVLLGITKASLSTDSF
ISAASFQETTRVLTEAAIMGKRDGLRGLKENVIVGRLIPGGTGLAFHRARKEKEAWEVEE
RQALLLAEKASMAGEAAEALQDIETQQHHGDEA
NT seq
4242 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcactgctcgatctattcaagcaagtacagaccaacgagaccttcgatgcaatc
aagatcggtctcgcttcgcctgagaaaatccgttcgtggtcctacggcgaagtcaagaag
ccggaaaccatcaactaccgtaccttcaagcctgagcgcgacggcctgttctgcgccaag
atctttggcccgatcaaggattacgaatgcctgtgcggcaagtacaagcgcctgaaacac
cgcggcgtgatctgcgaaaagtgcggcgtcgaagtcaccctggccaaagtgcgccgcgag
cgcatgggccacatcgagctggcctcgccgaccgcgcacatctggttcctgaagtcgctg
ccgtcgcgtctgggcatggtcctggacatgaccctgcgggacatcgaacgcgtgctgtac
tttgaagcatacgtcgtgaccgatccaggcatgaccccgctgaagaagtgccagatcatg
tcggaagacgactacgccgccaagtacgaagagtacggcgacgacttcaccgccttcatg
ggcgccgaaggtatccgtgaactgctgcgctcgatcgacatccaccgcgatgccgaaacc
ctgcgcgtggaactgaaggaatcgaaatccgaagccaagatcaagaaatacgccaagcgc
cttaaggtgttagaggcgttccagcgttcgggcatcaagcctgactggatgatcatggaa
gtgctgccagtgctgccgccggaactgcgtccgctggtaccgctggatggtggccgtttc
gcgacctcggatctgaacgatctgtatcgccgcgtcatcaaccgtaacaaccgtctgaaa
cgcctgatggagctgcgcgctccagagatcatcacgcgcaacgaaaagcgcatgctgcaa
gaagcggtcgattcgctgctggacaacggccgtcgcggcaaagcgatgaccggcgccaac
aagcgtccgctgaagtcgctggccgagatgatcaaaggtaaaggcggccgtttccgtcaa
aacttgctgggcaaacgcgtcgattactccggtcgttcggtcatcgtcgtgggcccgcaa
ttgaaactgcatcagtgcggcttgccgaaactgatggcgctggaactgttcaaaccattc
attttcaataaactggaactgatgggtctggctaccacgatcaaggccgcgaaaaagctg
gtcgagattcaagagccggtcgtgtgggacatcctggaagacgtgattcgtgaacatccg
atcatgttgaaccgcgcacctacgctgcaccgtctgggtatccaggcgttcgagccagtc
ctgattgaaggcaaggccatccagctgcacccgctcgtctgcgccgcattcaacgccgac
tttgacggtgaccaaatggcggtccacgttcctctgtcgatcgaagcacagatggaagca
cgcacgttgatgctggcatcgaacaacatcctgttcccgtcgaacggcgaaccatcgatc
gttccttcccaggatatcgtgttgggtctgtactacgcgacccgcgaagcgatcaatgcg
aagaacgaagggatgatgttccctgacgtgtcggaagtgatccgcgcctacgacaacaag
gaagtcgaactgacgacccgcgttaccgtgcgtattaccgaatacccgaaaaacgccgaa
acgggcgaattcgagaaaacggtaacccgctacgaaacgacgatcggccgtgcgatcctg
tcggaaattctacctaaaggcctgccgttctccgtcctgaaccgcgcgctgaaaaagaaa
gaaatttccaagctgatcaacacgtcgttccgcaagtgcggcctgcgcgccaccgtggtg
ttcgcagacaaactgatgcaatcgggtttccgcctggcgacacgcgccggtatctcgatc
tgcgtcgacgacatgctggtaccgccgcaaaaagtcacgctgatcgcgacggccgaatcg
gaagtcaagcagatcgaacagcaatacgcctcgggtctcgtgaccgccggcgagcgttac
aacaaggtagtcgatatctggggcaaaacctcggatgaagtcggcaaggccatgatggac
cagctcaaagtcgaagacgtgatccgccgtgacggcaccaagtcgacgcaagaatcgttc
aacgccatttacatgatggccgactccggcgcgcgcggttccgcagcccagattcgccag
ttggccggtatgcgtggtctgatggccaaaccggatggctcgattatcgaaacgccgatt
accgcgaacttccgcgaaggtctgaacgttttgcagtacttcatttcgacccacggcgct
cgtaaaggtctggccgatacggcgctgaaaacggctaactccggttacctgacgcgtcgt
ctggttgacgtgacacaagacttggtggtgatcgaggacgattgcggcaccatgaacggc
gccgtcatgaaggcactggtcgaaggtggtgaagtcatcgaaccgttgcgtgaccgtatc
ctcggccgcgtcgtggtgcatgacgtcgtcaatcctgaaacccaggaaacgctgtacgaa
gccggcaccctgatggacgaagacatggtcgaagagatcgagcgtctgtccatcgatgaa
gtcaaggtccgcacgccactgacttgcgacacgcgcttcggcctgtgcgccaagtgctat
ggccgcgatctgggccgcggcatgctggtcaacgccggcgaagccgtcggtgtggtggca
gcgcagtcgattggtgagcctggtacccagctgaccatgcgtacgttccacattggtggt
gcggcatcgcgtgcagcagtggcatcgtcggtggaagccaagtcgaacggtaccatccgc
ttcacggcaaccatgcgttacgtgacgaacggcaagggcgcgcaaatcgtcatttcccgt
tccggcgaagtgctgatcaccgacgaccatggccgtgagcgtgagcgtcataaagtaccg
tacggtgcgaccctgatcgtcaaggacggcatggtcatcaaggccggtacggccctggca
acgtgggatccgctgacccgtccgatcattaccgaatacgccggtcaagtgcgtttcgag
aacgtcgaagaaggcgtcaccgttgcccgtcaggtcgatgaagtgaccggtctgtccacc
ctggtggcgatcgatgcgaaacgtcgcggttcgttgacgaaaacgttgcgtccgcaagtc
aagctgatcaacgacgcgaacgaagaagtcaagatcgccggcaccgaacactcggtggcg
atcggcttccaggtcggcgcgctgatcatggtcaaggatggtcaacaggtatcggttggt
gaagtgctggcacgtattcctaccgaatcgcaaaaaacgcgcgatattaccggtggtctg
ccgcgcgttgcggaactgttcgaagcgcgctcgccgaaagatgccggtatgctggcggaa
gtcacgggtacggttgcgttcggtaaagaaaccaagggcaagcagcgtctggaaatcacg
gacatggacggcaacaagcatgagttcttgatcaccaaggacaaacaagtgctggtgcat
gacggccaagtcgtgaacaagggcgagatgatcgtggacggcccggccgatccgcaagac
atcctgcgcctgctgggtatcgaagcgctggcacgttacatcgttgacgaagtgcaagac
gtgtaccgtctgcaaggcgtgaagatcaatgacaagcacatcgaagtgatcgtgcgtcag
atgctgcgccgtgttcagatcgtcaatgccggcgacaccaactacatcgttggcgagcag
gtagagcgttcggaactgctggacgagaacgatcgcatggccgttgagaacaagattcca
gcgacctacgaaaacgtcttgttgggtattaccaaggcttcgctgtcgaccgattcgttc
atctcggccgcatcgttccaggaaaccacccgcgtgctgaccgaagcggcgatcatgggc
aagcgcgatggtctgcgcggcctgaaagagaacgtcatcgtcggccgtctgattcctggc
ggtacgggcctggccttccaccgcgcacgcaaagagaaagaagcgtgggaagtggaagag
cgtcaagcactgctgctggccgagaaagcctcgatggctggcgaagctgcagaagcattg
caggacatcgaaacccagcaacaccacggcgacgaagcgtaa
DBGET
integrated database retrieval system
