Janthinobacterium rivuli: P9875_11610
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Entry
P9875_11610 CDS
T09016
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
jri
Janthinobacterium rivuli
Pathway
jri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
P9875_11610 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jri03019
]
P9875_11610 (rnr)
03016 Transfer RNA biogenesis [BR:
jri03016
]
P9875_11610 (rnr)
Enzymes [BR:
jri01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
P9875_11610 (rnr)
Messenger RNA biogenesis [BR:
jri03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
P9875_11610 (rnr)
Transfer RNA biogenesis [BR:
jri03016
]
Prokaryotic type
tRNA degradation factors
P9875_11610 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
CSD
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
WFR81755
UniProt:
A0ABY8ICH4
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All DBs
Position
2522621..2525131
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AA seq
836 aa
AA seq
DB search
MSQNTHTIPSREDILGIFRSVSAPLDPQSLGKTLQVHADSMDVLVRRLKAMERDGQLKSD
ASGVFSLADQSALVAGRVTSHRDGFGFVIPDDASADLFLPEKEMQKVLHGDKVMARIVGT
DRRGRPEGTIVEVTYRANTHVIGRLIHENGTWVVAPEDQRIGQDILVTGSVGKAKAGQIV
SVELTEQPMRFKQPVGKIVEVLGALDDPGMEIEIAVRKFNVPHIFSAAALKQAEKLPFEV
RAADLKDRVDLRDVPLVTIDGEDARDFDDAVYCEPVKIGRANCFRLIVAIADVSHYVKPN
DALDADALERSTSVYFPRRVIPMLPEKLSNGLCSLNPAVDRLTLVCDAVVSDKGELKAYQ
FYPAVIHSAARLTYDEVAAVLGNTKGPEAARRADILPHLQNLEAVYRALLKARTERGAID
FETTETYIVCNTAGKIEKIIPRTRNEAHKIIEECMLAANVCAADLLLRNKHPGTYRIHAS
PTKEKLTQVRTFLKQVGLNLTGGDTPSASDYQTLMQQIKQRPDAALLQTMLLRSMQQAVY
SPDNIGHFGLAYEAYAHFTSPIRRYPDLLTHRAIKAILQGKKYEPKLSEKTVLNTNVSNA
TRKQQAKDKADGKPKKTDLTIWDALGVHCSANERRADEASRDVEAWLKCYFMQDKLGEEF
TGTITGVTTFGVFVQLDTLFVEGLVHVTELGTDYFQYDDARHELRGERTGKRYQLTDRLT
VQVARVDLETRKIDLRLVTDAELAGEEAPAKQAGGKRKGEKKSMVKPGPATEQRHEIKTS
VNGGKGSGGRSNGAKPVAKEVPKAAAPKRSKKPAAAPAAAAPRAAKTVSKSSKNKR
NT seq
2511 nt
NT seq
+upstream
nt +downstream
nt
ttgagccaaaatacccacaccatccccagccgggaggacattctcggcatattccgcagc
gtcagcgcgcctctcgacccgcagtctctcgggaaaacgctgcaagtgcatgccgattcc
atggatgtcctggtccgtcgcctgaaggcgatggagcgcgacggccagctcaagtctgac
gccagcggtgttttcagcctggccgaccagagcgcgcttgtcgccggtcgcgtcaccagc
caccgcgatggcttcggcttcgtcattcccgacgacgccagcgccgacctgttcctgccc
gagaaagaaatgcagaaagtactgcatggcgacaaggtcatggcccgcatcgtcggcacg
gaccgccgcggccgccctgaaggcacgatcgtcgaagtcacctaccgcgccaacacccac
gtcatcggccgtttgatccatgaaaacggcacctgggtcgtggcgccggaagaccagcgc
atcggccaggacatcctcgtcaccggttcggtcggcaaggcaaaagccggccagatcgtc
agcgtcgaactgaccgagcaaccgatgcgcttcaaacagccggtcggcaagatcgtcgaa
gtgctcggtgcgctcgatgatcccggcatggaaattgaaattgctgtgcgcaaattcaac
gtgccgcacatcttttccgccgccgccctcaagcaagctgaaaagctgccgttcgaagtg
cgcgccgccgacctgaaagaccgtgttgacctgcgcgacgtgcctttggtgaccatcgat
ggcgaggacgcgcgcgatttcgacgacgccgtgtattgcgaacccgtcaagatcggccgc
gccaactgcttccgcctgatcgtggcaattgccgacgtcagccattacgtgaaaccgaac
gacgcgctcgatgccgatgcgctcgaacgcagcacgtccgtctacttcccgcgccgcgtg
atcccgatgctgccggaaaaactgtcgaatggtttgtgctcgctgaacccggccgtcgac
cgcctgaccctcgtctgcgacgccgtcgtcagcgacaagggcgagctgaaggcgtaccag
ttctacccggccgtgatccactctgccgcgcgtctcacgtatgacgaagtcgctgccgtg
ctgggcaacaccaagggccccgaagcggcacgccgcgcggacatcctgccgcacctgcag
aacctggaagccgtctaccgtgccttgctgaaagcgcgcacggagcggggcgccatcgat
ttcgagacgacggaaacctatatcgtctgcaatacggctggcaagatcgaaaagatcatc
ccccgcacgcgcaacgaagcgcacaagatcatcgaagagtgcatgctggcggccaacgtc
tgcgcggccgatctgttgctgcgcaacaagcatccaggcacgtaccgcatccacgccagc
ccgaccaaggaaaagctcacgcaagtgcgcaccttcctcaagcaagtcggcctgaacctg
acgggcggcgacacgccatcggcatccgattaccagaccctgatgcagcagatcaagcag
cgtcccgacgcggccctgctgcaaacgatgctgttgcgctcgatgcagcaagccgtctac
agcccggacaatatcggccacttcggcctggcgtacgaggcttatgcccacttcaccagc
ccgatccgccgctatcccgacctgctgacgcaccgcgccatcaaggccattctgcaaggc
aagaaatacgagccgaagctgtccgagaagaccgtgctgaacaccaacgtgtcgaacgcc
acgcgcaagcagcaggccaaggacaaggccgacggcaagccgaaaaagacggatctgacg
atctgggacgcgctgggcgtgcattgctcggccaacgagcgccgcgccgacgaagcgtcg
cgcgacgtcgaagcctggctgaagtgctacttcatgcaagacaagctgggcgaggagttc
accggcacgatcaccggcgtgaccaccttcggcgtgttcgtgcaactcgacaccctgttt
gtcgaaggcctggtgcacgtcaccgagctgggcaccgactacttccagtacgacgatgcg
cgccatgaattgcgcggcgaacgcacgggcaagcgctaccagttgacggaccgtctgacg
gtgcaagtggcacgtgtcgacctggaaacgcgcaagatcgacctgcgtttggtgaccgat
gcggaactggcgggcgaagaagcgccagccaagcaagctggcggcaagcgcaagggtgaa
aagaaatcgatggtcaagcccggtcccgcgaccgagcagcgccacgagatcaaaaccagc
gtcaatggcggcaagggttccggcggccgttccaacggcgccaagcctgttgccaaggaa
gtccccaaggcagccgcgccgaagcgcagcaagaaaccagccgcggcacccgctgcggcg
gcaccacgtgcagcaaaaactgtatcaaaatcaagcaagaacaagcgataa
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