Janthinobacterium rivuli: P9875_13270
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Entry
P9875_13270 CDS
T09016
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
jri
Janthinobacterium rivuli
Pathway
jri03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
jri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
P9875_13270 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
jri03400
]
P9875_13270 (recB)
Enzymes [BR:
jri01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
P9875_13270 (recB)
DNA repair and recombination proteins [BR:
jri03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
P9875_13270 (recB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
UvrD_C_2
AAA_19
PDDEXK_1
Motif
Other DBs
NCBI-ProteinID:
WFR82068
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All DBs
Position
2886749..2890417
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AA seq
1222 aa
AA seq
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MTSHLLNPLAFPLHGSRLIEASAGTGKTWTIAALYVRLVLGHGVGHGGEGTAFTRPLLPA
DILVMTFTRAATRELSNRVRERLIEAAAYFRHESGGSDPFLDALLESYPDESERQKAAHR
LMLAAETMDEAAIFTIDAWCQRMLREHAFDSGSLFDEELVSDEQALFEDAAHDYWRQQVY
PLPPQALDVLLACWPDVGALKKGARELARRADIMGMADEEPLSMLIAREQRALAAQLATL
KAGWVERVDRMAVWINDHRAANPKCFNGVKMKPENLAKWFDGLRKWAQDPLLLLPAITAK
AWERLTPFGIEDAFAKSFTAQVPECFEHTEALGIALAGITPLAHKLHLHAAAAIARRMDQ
LKRQSRQFGFADMLQRLHDALAGENGAALRQRIIDQYPLAMVDEFQDTAPAQYRIFNLLY
RIADNDPALGLFLIGDPKQSIYGFRGADIQSYLAARRATTGRHYQLGTNYRSTAPLVAAV
NQLFLHAEREEVPAGAFRYRKNGENPLPFEAVDAKGRAEHLVNASGPLPALMAACASDEG
LRGDSYREYFAQHCAEHIVAMLGDAQAGFTGPDGFTRLQPADVAILVRDRKEAAAIRRAL
ARRRVASVYLSDKDSVVDSEEAQDVLRWLAALANPLDGGLARAAFATRTIGLSLGELARL
SSDELEWERRVEQLKALHLIWQRQGVLAMLRRFIHELQLPAMLLQQTGGERRLTNLLHLA
ELLQSASRQLDGEQALIRWLAEQIAGEGEGGDERVLRLESDAELVKVITVHKSKGLEYPL
VYLPFSVTARKVDKRNRSFFEYAGEDGERRLDLSLSDEAMAAVEEARIEEDLRLLYVALT
RARHFLWLGVAAQAARKAGDNTLHESALGYLLTGGDKLPFDQLLLRWQQVAGSCDAIYVG
SLAQPDACTVLDRVERRPELRPAPVFAGEFERDWSVGSFTSLTRQIGAVTAAHVPQRALE
ETLLEDGTAVAVATPMHMGDAPWHRFPRGSVPGNFLHEQLEWMGGEGFDCVHDDNFNTRL
AARCERAGWGHRQDDAIAWLREIAITPLPLLDASLSQLNSTLSEMEFWFPSEHLSTAALD
QLCTRLLLDGAPRPVLPRRQLHGMLKGFADLVIEQDGRYWVLDYKSNALGANDAAYHTQA
LAAGMAQHRYDIQGAIYMLALHRLLKSRMGDAYDPAEHLGGAIFLFLRGIANADTHGCYW
LAPQLELLDGLDQLLSEEVEIA
NT seq
3669 nt
NT seq
+upstream
nt +downstream
nt
atgacgagccatctgctcaaccccctggcgttcccgctgcacggctcgcgcctgatcgaa
gcgtccgccggcaccggtaaaacctggaccatcgccgcgctgtacgtgcggctagtactt
ggtcacggcgtgggccacggcggcgaaggcacggcttttacccgtcccctgctgccggcc
gatattttggtgatgacgtttacccgcgccgccacgcgcgaattgtcgaaccgcgtgcgc
gagcgcctgatcgaggcggccgcatatttccgccacgagtctggcggcagcgacccgttt
ctcgacgccttgctcgagtcctatccggatgagagcgagcggcaaaaggccgcgcaccgg
ctgatgctcgctgccgagacgatggatgaagcggccattttcaccatcgacgcgtggtgc
cagcgcatgctgcgcgagcatgcgttcgacagcggcagcctgttcgacgaagaactggtc
agcgacgagcaagccctgttcgaggatgccgcccacgattactggcgccagcaagtctat
cccttgccgccgcaggcgctcgacgtgctgctggcctgctggcccgacgtgggggcgctg
aagaaaggcgcgcgcgagctggcgcgccgcgccgacatcatgggcatggcggacgaagaa
ccgttatccatgctgatcgcgcgcgaacagcgggcgctggccgcgcagctggccaccctg
aaggcgggttgggtcgagcgcgtcgaccggatggccgtgtggatcaacgaccaccgtgcc
gccaatcccaagtgttttaacggcgtcaagatgaagccggagaacctggcgaagtggttc
gacggcttgcgcaagtgggcgcaggatccgctgttgctgctgccggccatcacggccaag
gcgtgggagcgattgacgccgttcggcatcgaggatgcgtttgccaagagtttcacggcg
caggtgcccgaatgcttcgagcatacggaggcgttggggatcgccctggcgggtatcacg
ccgctggcgcacaagctgcacctgcatgcggcggcggccatcgcgcggcgcatggaccag
ttgaagcgccagtcgcgccagttcggctttgccgacatgctgcagcgattgcacgacgcg
ctggctggcgaaaatggcgcggccctgcgccagcgcatcatcgaccagtatccgctggcc
atggtcgatgaattccaggatacggcgccggcccagtaccggattttcaacctgctgtac
cgcatcgccgacaacgatccggccctgggcctgttcctgatcggcgacccgaaacagtcg
atctacggctttcgcggcgccgacatccagagctacctggcggcgcgccgcgcgacaacg
ggacgccattaccagctgggtaccaattaccgttccacggcgccgctggtggcggccgtc
aaccagctgttcctgcacgccgagcgcgaggaggtgccggctggcgccttccgctaccgc
aaaaacggcgagaatccgctgccgttcgaggccgtcgacgccaagggccgcgccgagcac
ctggtgaacgccagcggcccgctgcctgccctgatggccgcctgcgccagcgatgaaggg
ctgcgcggcgacagctaccgcgagtatttcgcgcagcactgcgccgaacatatcgtcgcc
atgctgggcgatgcgcaagctggttttactggcccggacggttttacgcgcctgcagccg
gccgatgtcgccatcctcgtgcgcgaccgcaaggaggcggcagccatccgccgcgcgctg
gcgcgccgccgggtcgccagcgtctacctgtccgacaaggattccgtcgtcgacagcgag
gaagcgcaagacgtgctgcgctggctggcggcgctggccaacccgctcgacggggggctg
gcgcgcgccgcctttgccacgcgcaccattggcctgtcgctgggcgaactggcgcgcctg
tcgagcgatgaactggaatgggagcgccgggtcgagcaactgaaggccttgcatttgatc
tggcagcgccagggcgtgctggccatgctgcgccgcttcatccacgaactgcagttgccg
gccatgctgctgcagcagacgggcggcgagcggcgcttgacgaatctgctgcacctggcc
gaactgctgcaatcggccagccgccagcttgatggcgagcaggcgctgatacgctggctg
gccgagcagatcgccggcgaaggcgagggcggcgacgaacgcgtgctgcgcctggaaagc
gatgcggagctggtgaaagtcatcacggtgcacaaatccaagggactcgaatatccgctc
gtgtatctgccgttttccgtcacggcgcgcaaggtggacaaacgcaaccgcagcttcttc
gagtacgcgggcgaggatggcgaacgccgcctcgacttgtccttgtccgacgaagccatg
gcggccgtcgaagaagcacgtatcgaggaagacttgcgcctgctgtacgtggcgctgacg
cgcgcgcgccacttcctgtggctgggcgtggccgcccaggcggcgcgcaaggcgggcgat
aacaccttgcacgaatcggcgctcggctacctgctgacgggcggcgacaagctgccgttc
gaccagctgctgttgcgctggcagcaggtggcgggcagttgcgacgccatctacgtgggt
tctttggcgcagcccgacgcctgcacggtgctggaccgcgtcgagcggcgtcccgagctg
cgtcccgcccccgtgttcgcgggcgaattcgaacgcgactggtcggtgggcagcttcacg
tcgctgacgcgccagatcggcgccgtgacggccgcgcacgtgccgcagcgggcgctggaa
gaaaccttgctggaagatggcacggcggtggccgtggccacgccgatgcacatgggcgac
gcgccctggcaccgcttcccgcgcggttccgtgcccggcaatttcctgcacgagcagctc
gaatggatgggcggcgagggttttgactgcgtccacgacgacaatttcaatacccgcctg
gccgcgcgctgcgagcgggcgggctggggccaccgccaggacgacgccatcgcctggctg
cgcgagatcgccatcacgccgctgccgctgctcgatgcctcgctgtcgcagcttaatagc
accctgtccgagatggagttctggttccccagcgagcatttgtccacggcggcgctcgat
cagctgtgcacgcgcttgctgctcgacggcgcgccgcgtcccgtgctgccgcggcgccag
ctgcacggcatgctgaaaggctttgccgacctggtcatcgaacaagatggccgctactgg
gtgctcgactacaagtcgaatgcgctgggcgccaacgacgctgcctatcacacgcaggca
ctggcggccggcatggcgcagcaccgctacgatatccagggcgccatctacatgctggcc
ctgcaccggctgctgaaaagccgcatgggcgacgcgtatgacccggccgagcacctgggc
ggcgccatcttcctgttcctgcgcggcatagcgaatgcggacacgcatggctgctattgg
ctggcgccgcagctggaactgctggacggcctcgatcaattattgtcagaagaagtggaa
atagcatga
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