Janthinobacterium rivuli: P9875_24035
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Entry
P9875_24035 CDS
T09016
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
jri
Janthinobacterium rivuli
Pathway
jri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
P9875_24035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jri03019
]
P9875_24035
03009 Ribosome biogenesis [BR:
jri03009
]
P9875_24035
Enzymes [BR:
jri01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
P9875_24035
Messenger RNA biogenesis [BR:
jri03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
P9875_24035
Ribosome biogenesis [BR:
jri03009
]
Prokaryotic type
rRNA processing factors
P9875_24035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
WFR78741
LinkDB
All DBs
Position
5294820..5297933
Genome browser
AA seq
1037 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKSNIYKGVITRIEPSLEACFVSY
GEDRHGFLPFKEVARTYFREGVDVRNASVKEALREGQEIMVQVEKEERGNKGAALTSFVS
LAGRYLVLMPNNPRGGGVSRRVEGEERQELRETMDKLDLPAGMSVIARTAGIGRNVDELQ
WDLNYLMQLWRAIEGAGKSANGAFLIYQESSLVIRAIRDYFQPDIGEILIDTDEIYDQAH
QFMSHVMPDMVHRVKRYSDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVSV
DVNSARATRGSDIETTAFNTNCEAAEEVARQLRLRDLGGLIVIDFIDMEVAKNQREVEQR
LKDALHHDRARVQMGKISRFGLMELSRQRLRPSLSEGSHVTCPRCSGTGHIRDTESSALQ
VLRIIQEEAMKENSATIHVQVPVDVGAFLLNEKRGEVLKIENRHRIAVILIPNKHLETPH
YKLERIKHDDPRLEDSQASYNLAESAETDMAYSKRQKEEAKPRQEAVVKTITPDQPAPLV
ERKPVEAKPAPVAAPAAPQGLIAKIISFFTGAPAPVAPAPAPVAPAKPAGADRGDRNSRG
PRGRGRNGKPGREEREPGQGRPAQDDAAKEAEALEKAARPPRPPRPPREPREAREGGDAT
AVPRERGERPERAERPERAERPERAERPPRQPREGREPRADKAVVAEVKAEELALVGATA
SAVNVVVPSSGPESDAAPANLLKAPANAGPEGDETENDVEGEEPRRRRRRGGRNRNRRDR
ETGELIESANGDNDGQDAPVISFTVAPAPEAAADVATAPVEAVAEAAPAVVAEVVEVVEV
VEVAKVEEAAPAAEVIVPPAPVEAVVAAAQAEPAAAEPAPAAEYSFAEKAEAAPAPAPAP
AEVIVEAAPVVETVAVVETVVVAEEVPAAAPVAEAAPAVVEAAPVVAEVAPVAAPAPAPA
PAPVVAPAPAAPAAAPLDLSAVLGSAGLTLAATDPEKLRLAQEAAAKAVAPVRKPRERKP
LPPQSDEPLIQVNTQRP
NT seq
3114 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgttgtttaatgccacgcagcaagaagaactgcgcgtagcgattgtcgac
ggacaaaaactgatcgacatcgatatcgagacagccgggcgcgaacagcgcaaatccaat
atctacaagggcgtcatcacgcgcatcgagccatcgctcgaagcgtgcttcgtcagctat
ggcgaagaccgccacggcttcctgcctttcaaggaagttgcccgcacgtatttccgcgaa
ggcgtcgatgtgcgtaacgcttccgtcaaggaagcgctgcgcgaaggccaggaaatcatg
gtccaggtggaaaaggaagagcgcggcaacaagggcgccgccctgacctcgtttgtttcc
ctggccggccgttacctggtcttgatgccgaacaacccgcgtggtggtggcgtatcgcgc
cgcgtggaaggtgaagagcgccaggaattgcgcgaaaccatggataaactggacttgcct
gctggcatgtccgtgattgcccgcacggcaggcatcggccgcaacgtcgatgaactgcag
tgggatttgaattacctgatgcaactgtggcgcgccatcgaaggcgccggcaagtcggcc
aacggcgctttcctgatctaccaggaatcgtcgctggtgatccgcgccatccgcgactac
ttccagcccgacatcggcgagatcctgatcgacaccgacgagatctacgaccaggcgcac
cagttcatgagccacgtgatgcccgacatggtgcaccgcgtaaagcgctacagcgacgac
gtgccgctgttctcgcgcttccagatcgaacatcaaatcgaaacggcgtacagccgcacc
gtgccgttgccatcgggcggcgccatcgtgatcgaccataccgaagcgctggtctccgtc
gacgtcaactcggcccgcgccacgcgcggctcggacatcgagacgaccgccttcaacacc
aactgcgaagcggccgaagaagtggcccgccagctgcgcttgcgcgatctgggcggcttg
atcgtcatcgacttcatcgacatggaagtggcgaagaaccagcgcgaagtggaacagcgc
ctgaaagacgcgctgcaccatgaccgtgcccgcgtacaaatgggcaagatttcccgcttc
ggcctgatggaactgtcgcgccagcgcctgcgcccttcgctgtccgaaggttcgcacgtg
acgtgcccgcgctgctccggcaccggccacatccgcgatacggaatcgtccgccctgcag
gtgctgcgcatcatccaggaagaggcgatgaaggaaaactcggccaccatccacgtgcaa
gtacccgtggacgtgggcgccttcctgctcaacgaaaagcgcggcgaagtgctgaagatc
gagaaccgccaccgcatcgccgtgatcctgatcccgaacaagcatctggaaacgccgcac
tacaagctggaacgcatcaagcacgacgatccgcgtctggaagacagccaggccagctac
aacctggctgaaagcgctgaaaccgacatggcttacagcaagcgccagaaggaagaagcc
aagccgcgccaggaagctgtcgtcaaaacgatcacccctgaccagccggcaccgctggtc
gagcgcaagcccgtcgaagcgaaaccggctccagtggccgcgcctgccgcaccacaaggc
ctgatcgccaagatcatcagcttcttcaccggcgctcccgcaccggtggcaccagcgccc
gctcctgtcgctccagccaagccggccggcgccgaccgtggcgaccgcaacagccgtggc
ccgcgtggccgtggccgcaacggcaagcctggccgcgaagaacgcgaaccgggccagggc
cgtccagcccaggacgatgccgcgaaagaagcggaagcactggaaaaagcggcccgtcca
ccacgtccaccgcgtccgccacgcgaaccgcgtgaagcgcgcgaaggtggcgatgcaacg
gccgtgccacgcgaacgcggtgaacgtccggaacgcgcggaacgtcctgagcgcgcagag
cgcccggaacgcgccgagcgtccgccacgccagccacgcgaaggccgcgaaccacgcgcc
gacaaggctgttgttgctgaggtgaaagctgaagaactggccctggttggcgccaccgcc
agcgcggtgaatgtggtcgtgccgtcaagcggtcctgaatccgacgccgcaccggccaac
ctgctgaaagcaccggcgaatgccggtcctgaaggcgatgagacggaaaacgacgtggaa
ggcgaagagccgcgccgccgccgtcgtcgtggtggccgcaaccgcaaccgccgcgaccgc
gaaacgggcgagctgatcgaatcggcaaacggtgacaacgacggccaggacgcgccagtg
atcagctttacggtcgctccggcgccggaagccgccgctgacgtcgctaccgcgccagtg
gaagctgtagctgaagccgcaccagccgtcgtggctgaagtggtggaagtggtggaagtg
gtggaagtggccaaggttgaggaagccgcaccagcggctgaagtaatcgtgccgccagcc
cctgtggaagccgtcgttgctgcagcgcaagctgaaccagccgctgccgaaccagcacca
gctgccgagtacagcttcgccgagaaagcggaagccgcaccggcgccagcgcctgcgcca
gcggaagtcatcgtcgaagcggcgccagtcgtggaaacggttgctgtcgtggaaaccgtc
gtcgtggcggaagaagttccagccgcagcgccagtcgccgaagcggcacctgccgtggtg
gaagcggccccggtggttgccgaagtggctcccgtcgctgctccagcaccagcaccagca
ccagctcccgtcgttgctcctgctcctgcagcacctgccgccgcgccgctggacttgagc
gctgtgctcggttcggccggcctgaccctggcggccaccgatccggaaaaactgcgcctg
gcgcaggaagcggccgccaaggcagtcgctccggtacgcaagccgcgcgaacgcaagcca
ttgccgccgcaatcggatgagccgttgatccaggtcaacacgcaacgtccataa
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