Janthinobacterium rivuli: P9875_27015
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Entry
P9875_27015 CDS
T09016
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
jri
Janthinobacterium rivuli
Pathway
jri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
P9875_27015 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
jri03021
]
P9875_27015 (rho)
03019 Messenger RNA biogenesis [BR:
jri03019
]
P9875_27015 (rho)
Transcription machinery [BR:
jri03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
P9875_27015 (rho)
Messenger RNA biogenesis [BR:
jri03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
P9875_27015 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
S1CSD-TOTE-2
NACHT
Motif
Other DBs
NCBI-ProteinID:
WFR79295
UniProt:
A0ABY8I5C8
LinkDB
All DBs
Position
5953663..5954925
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AA seq
420 aa
AA seq
DB search
MHLSELKALHVSALLEMAIGLDIDNAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPD
GFGFLRSPDASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN
GESPEMSKHRILFENLTPLHPNEPLRLEREMNGQENITGRIIDLIAPIGKGQRGLLVASP
KSGKSVILQHIAHAITANHPDITLIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHV
QVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRF
FGAARNIEEGGSLTIIATALIETGSRMDDVIFEEFKGTGNMEVHLERRLAEKRVYPAINL
NKSGTRREELLIKPNELQKIWILRKLLYSMDEIEAMEFILDKMKATKNNAEFFDMMRRGG
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgcatttatccgaactaaaggccctacacgtatccgccctgcttgagatggcgatcggt
cttgacattgacaacgcagcccgcttgcgcaaacaggagctgatgttcgctatcctgaaa
aaacgcgccaagtccggcgaacagatttttggcgacggcgccctggaagtgctgcctgac
ggcttcggcttcctgcgctcgcccgacgccagctacatggcgtccaccgacgacatttac
atctccccttcgcaaatccgccgcttcaatctgcacaccggcgattcgatcgaaggcgag
gtacggaccccgaaagatggcgaacgctatttcgcattggtcaaagtcgacaaggtcaac
ggcgaatcgccggagatgtcgaaacaccgcatcctgtttgaaaacctgacgccgctgcac
ccgaacgagccgctgcgcctggaacgtgaaatgaatggccaggaaaacatcaccggccgc
atcatcgacctgatcgccccgatcggcaaaggccagcgcggcttgctggtggcgtcgccg
aaatccggtaaatccgtgatcctgcagcacatcgcccatgcgatcacggccaaccacccg
gacatcaccctgatcgtgctgctgatcgacgaacgtccggaagaagtgacggaaatgcaa
cgctccgtgcgcggcgaagtcgtcgcctcgaccttcgacgagccggccacgcgccacgtg
caagtggccgaaatggtgctggaaaaagccaagcgcctggtcgaaatgaaaaaagacgtg
gtgattctgctcgactcgatcacccgtctggcgcgcgcctacaacaccgtcatccctgcc
tcgggcaaggtcctgaccggtggtgtcgacgcgaacgcgctgcaacgtccaaaacgcttc
ttcggcgccgcgcgcaatatcgaagaaggcggctcgctgaccatcatcgccacggcgctg
atcgaaacgggctcgcgcatggatgacgtgatctttgaagaattcaagggtaccggcaac
atggaagtgcatctggaacgccgtctggccgaaaaacgcgtctacccggcaatcaacctg
aacaaatcgggtacccgccgcgaagaactgctgatcaagccgaacgaactgcaaaaaatc
tggatcctgcgcaagttgctgtactcgatggacgagatcgaggcgatggagttcattctg
gacaagatgaaagccacgaagaataacgcggagttcttcgacatgatgcgccgcggcggc
tga
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