Janthinobacterium svalbardensis: CNX70_03040
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Entry
CNX70_03040 CDS
T05119
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
jsv
Janthinobacterium svalbardensis
Pathway
jsv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
jsv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CNX70_03040 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
jsv03021
]
CNX70_03040 (rpoC)
03400 DNA repair and recombination proteins [BR:
jsv03400
]
CNX70_03040 (rpoC)
Enzymes [BR:
jsv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CNX70_03040 (rpoC)
Transcription machinery [BR:
jsv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CNX70_03040 (rpoC)
DNA repair and recombination proteins [BR:
jsv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CNX70_03040 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Biotin_lipoyl_2
PYNP_C
Motif
Other DBs
NCBI-ProteinID:
ATD59278
UniProt:
A0A290WRI9
LinkDB
All DBs
Position
698093..702334
Genome browser
AA seq
1413 aa
AA seq
DB search
MKALLDLFKQVQTNETFDAIKIGLASPEKIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPTAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVTDPGMTPLKKCQIMSEDDYAAKYEEYGDDFTAFM
GAEGIRELLRSIDIHRDAETLRVELKESKSEAKIKKYAKRLKVLEAFQRSGIKPDWMIME
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPEIITRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRPLKSLAEMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPQ
LKLHQCGLPKLMALELFKPFIFNKLELMGLATTIKAAKKLVEIQEPVVWDILEDVIREHP
IMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSIEAQMEA
RTLMLASNNILFPSNGEPSIVPSQDIVLGLYYATREAINAKNEGMMFPDVSEVIRAYDNK
EVELTTRVTVRITEYPKNAETGEFEKTITRYETTIGRAILSEILPKGLPFSVLNRALKKK
EISKLINTSFRKCGLRATVVFADKLMQSGFRLATRAGISICVDDMLVPPQKVTLIAAAES
EVKQIEQQYASGLVTAGERYNKVVDIWGKTSDEVGKAMMDQLKVEDVIRRDGTKSTQESF
NAIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVTQDLVVIEDDCGTMNGALMKALVEGGEVIEALRDRI
LGRVTVHDVVNPETQETLYEAGSLLDEDMVEEIERLSIDEVKVRTPLTCDTRFGLCAKCY
GRDLGRGMLVNAGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSNGTIR
FTATMRYVTNGKGAQIVISRSGEVLITDDHGRERERHKVPYGATLIVKDGLVIKAGTALA
TWDPLTRPIITEYAGQVRFENVEEGVTVARQVDEVTGLSTLVAIDAKRRGSLTKTLRPQV
KLINEANEEVKIAGTEHSVAIGFQVGALIMVKDGQQVSVGEVLARIPTESQKTRDITGGL
PRVAELFEARSPKDAGMLAEVTGTVAFGKETKGKQRLEITDMDGNKHEFLITKDKQVLVH
DGQVVNKGEMIVDGPADPQDILRLLGIEALARYIVDEVQDVYRLQGVKINDKHIEVIVRQ
MLRRVQIVNAGDTNYIVGEQVERSELLDQNDLMEAGNKIPATYENVLLGITKASLSTDSF
ISAASFQETTRVLTEAAIMGKRDGLRGLKENVIVGRLIPGGTGLAFHRARKEKEAWEVEE
RQALLLAEKASMAGEAAEALQDIESQQHHGDEA
NT seq
4242 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcactgctcgatctattcaagcaagtacagaccaacgagaccttcgatgcaatc
aagatcggtctcgcttcgcctgagaaaatccgttcgtggtcctacggcgaagtcaaaaag
ccggaaaccatcaactaccgtaccttcaagcctgagcgcgatggcctgttctgtgccaag
atctttggcccgatcaaggattacgaatgcctgtgcggtaagtacaagcgcctgaaacac
cgcggcgtgatctgcgaaaagtgcggcgtcgaagtcacgctggccaaggtgcgccgcgag
cgcatgggccacatcgagctggcctcgccaaccgcgcacatctggttcctgaagtcgctg
ccgtcgcgtctgggcatggtcctggacatgaccctgcgggacatcgaacgcgtgctgtac
tttgaagcatacgtcgtgaccgatccaggcatgaccccgctgaagaagtgccagatcatg
tcggaagacgactacgccgccaagtacgaagagtacggcgacgacttcaccgccttcatg
ggcgccgaaggtatccgtgaactgctgcgctcgatcgacatccaccgcgatgccgaaacg
ctgcgcgtggaactgaaggaatcgaaatctgaagccaagatcaagaaatacgccaagcgc
ctgaaagtgctggaagcgttccagcgttcgggcatcaagcctgactggatgatcatggaa
gtgctgccggtgctgccgccggaactgcgtccgctggtaccactggatggtggccgtttc
gcgacctcggatctgaacgatctgtatcgccgcgtcatcaaccgtaacaaccgtctgaaa
cgcctgatggagctgcgcgctccagagatcatcacgcgcaacgaaaagcgcatgctgcaa
gaagcagtcgattcgctgctggacaacggccgtcgcggcaaagcgatgaccggcgccaac
aagcgtccgctgaaatccctggcagaaatgatcaagggcaagggcggccgtttccgtcaa
aacttgctgggcaaacgcgtcgattactccggtcgttcggtcatcgtcgtgggcccgcaa
ttgaaactgcatcagtgcggcttgccgaaactgatggcgctggaactgttcaaaccattc
attttcaataaactggaactgatgggtctggcgaccacgatcaaggcagcgaaaaagctg
gtcgagattcaagagccggtcgtgtgggacatcctggaagacgtgattcgcgaacatccg
atcatgttgaaccgcgcaccgacgctgcaccgtctgggtatccaggccttcgagccagtc
ctgattgaaggcaaggccatccagttgcacccactcgtctgcgccgcattcaacgccgac
tttgacggtgaccaaatggcggtccacgttcctctgtcgatcgaagcgcagatggaagca
cgcaccctgatgctggcatcgaacaacatcctgttcccatcgaacggcgaaccgtcgatc
gtgccatcgcaggatatcgtgctgggtctgtactacgcgacgcgcgaagcgatcaatgcg
aagaacgaagggatgatgttccctgacgtctcggaagtgatccgcgcctacgacaacaag
gaagtcgaactgacgacccgcgtgaccgtgcgtattaccgaatacccgaaaaacgccgaa
acgggcgaattcgagaaaacgattacccgctacgaaacgacgatcggccgtgcgatcctg
tcggaaattctgccgaaaggcctgccgttctccgtcctgaaccgcgcgctgaaaaagaaa
gaaatttccaagctgatcaacacgtcgttccgcaagtgcggcctgcgcgccaccgtggtg
ttcgcagacaaactgatgcaatcgggtttccgcctggcgacacgcgccggtatctcgatc
tgcgtcgacgacatgctggtaccaccgcaaaaagtcaccctgatcgcggcggccgaatcg
gaagtcaagcagatcgaacagcaatacgcctcgggtctcgtgaccgccggcgagcgttac
aacaaggtagtcgatatctggggcaaaacctcggatgaagtcggcaaggccatgatggac
cagctcaaagtcgaagacgtgatccgccgcgacggcaccaagtcgacgcaagaatcgttc
aatgccatttacatgatggccgactccggcgcgcgcggttccgcagcccagattcgtcag
ttggccggtatgcgtggtctgatggccaaaccggatggttcgattatcgaaacgccgatt
accgcgaacttccgcgaaggtctgaacgttttgcagtacttcatttcgacccacggtgcg
cgtaaaggtctggccgatacggcgctgaaaacggctaactccggttacctgacgcgtcgt
ctggttgacgtgacgcaagacttggtggtgatcgaggacgattgcggcaccatgaacggc
gcgctgatgaaggcgctggtcgaaggtggtgaagtcatcgaagcgctgcgcgaccgtatc
ctcggccgtgttaccgtgcacgatgtcgtcaatcctgaaactcaggaaacgctgtacgaa
gccggttcgttgctggacgaagacatggtcgaagagatcgagcgtctgtccatcgatgaa
gtcaaggtgcgtacgccactgacttgcgacacgcgcttcggcctgtgcgccaagtgctat
ggccgcgacctgggccgcggcatgctggtcaacgccggcgaagccgtcggtgtggtggca
gcgcagtcgattggtgagccgggtacccagctgaccatgcgtacgttccacattggtggt
gcggcatcgcgtgcagcagtggcatcgtcggtggaagccaagtcgaacggtaccatccgc
ttcacggcaaccatgcgttacgtgacgaacggcaagggcgcgcaaatcgtcatttcccgt
tccggcgaagtgctgatcaccgacgaccatggccgtgagcgtgagcgtcataaagtgccg
tacggcgcgaccctgatcgtcaaggacggcctggtcatcaaggccggtacggccctggca
acgtgggatccgctgacccgtccgatcattaccgaatacgccggtcaagtgcgtttcgag
aacgtcgaagaaggcgtcaccgtcgcccgtcaggtcgacgaagttaccggtctgtccacc
ctggtggcgatcgatgcgaaacgtcgcggttcgttgacgaaaacgttgcgtccgcaagtc
aagctgatcaacgaggcgaacgaagaagtcaagatcgccggcaccgaacactcggtggcg
atcggcttccaggtcggcgcgctgatcatggtcaaggacggtcagcaggtatcggttggt
gaagtgctggcacgtattcctaccgaatcgcaaaaaacgcgcgatattaccggtggtctg
ccacgcgtagcggaactgttcgaagcgcgctcgccgaaagatgccggtatgctggcggaa
gtcacgggtacggttgcgttcggtaaagaaaccaagggcaagcagcgtctggaaatcacg
gacatggacggcaacaagcatgagttcttgatcaccaaggacaaacaagtgctggtgcat
gacggccaagtcgtgaacaagggcgagatgatcgtggacggcccggccgatccgcaagac
atcctgcgcctgctgggtatcgaagcgctggcacgttacatcgtcgacgaagtacaagac
gtgtaccgtctgcaaggcgtgaagatcaatgacaagcacatcgaagtgatcgtgcgtcag
atgctgcgccgcgtacagatcgtcaatgctggcgacaccaactacatcgttggcgagcag
gttgagcgttcggaactgctggatcagaacgacctgatggaagccggaaacaaaattcct
gcaacctacgaaaacgttctgctgggtattaccaaggcttcgttgtcgaccgattcgttc
atctcggccgcatcgttccaggaaaccacccgcgtgctgaccgaagcggcgatcatgggc
aagcgcgatggtttgcgcggcctgaaagagaacgtcatcgtcggccgcctgattcctggc
ggtacgggcctggccttccaccgcgcacgcaaagaaaaagaagcgtgggaagtggaagag
cgtcaagcactgctgctggccgagaaagcctcgatggccggcgaagctgccgaagcgttg
caggatatcgaaagccagcaacaccacggcgacgaagcgtaa
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integrated database retrieval system
