Janthinobacterium svalbardense: CNX70_04215
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Entry
CNX70_04215 CDS
T05119
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
jsv
Janthinobacterium svalbardense
Pathway
jsv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jsv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CNX70_04215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jsv03019
]
CNX70_04215
03009 Ribosome biogenesis [BR:
jsv03009
]
CNX70_04215
Enzymes [BR:
jsv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CNX70_04215
Messenger RNA biogenesis [BR:
jsv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CNX70_04215
Ribosome biogenesis [BR:
jsv03009
]
Prokaryotic type
rRNA helicases
CNX70_04215
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
DbpA
Helicase_C
DeaD_dimer
ResIII
CMS1
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
ATD63625
UniProt:
A0A290X389
LinkDB
All DBs
Position
967371..969533
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AA seq
720 aa
AA seq
DB search
MSDTPISLFSDLNLSEPLIRALKDVGYETPSPIQAATIPLLLANRDVLGQAQTGTGKTAA
FALPILSRIDLKQSSPQALVLAPTRELAIQVAEAFQVYAAHIPGFHVLPIYGGQSYGPQL
SALRRGVHVIVGTPGRVIDHLDKGSLDLSKLKTLVLDEADEMLRMGFIDDVERILKETPE
GHQTALFSATMPSVIKRIATTYLVNPAEVTVAAKTGTADNIRQRYWLVSGMHKLDALTRI
LEAEVFDGMIIFARTKLGTEELAGKLQARGFSAAAINGDIQQAQRERTIQQLKDGKIDIL
VATDVAARGLDVERISHVINYDVPHDPESYTHRIGRTGRAGRSGEAILFITPREKSLLKA
IERSTRQPIGMLELPTIQAVNDVRIAKFKEQISETLALGELEQFQSLIEDFEREQNIPAI
EIAAALAKMARGNVPLLLDKNKAREQATWQDDRPVRQDRFERNDRPERGERFERNERSER
GERPAFPKKERISRPADAGMQTFRIEVGHQHGVKPGNIVGAIANEAGIDSKNIGRIEIYD
DYSVLDLPDTMPKELLDQLKSVWVAGQQLRISRDGDAPDLAPPAASRKPFAAKAAPAFKD
APADAGEVAPAPRAPKKERPRPGVTAYRIEVGREHAVTPSNIVGAIANEANLEAKHIGRI
DIFDNYSVLDLPEGMPPEILDHLKSVVVSGQKLRISLDDGTTERKPAPARPKSPPRKTYK
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatacaccaatttccttattttccgaccttaacctgagcgagccgctgattcgc
gcgctcaaggatgtcggttacgaaacaccgtcgcctatccaggcggccacgattccatta
ttgctcgctaaccgcgacgtgctgggccaggcgcaaacaggcacgggtaagaccgccgcc
ttcgccttgcctatcctgtcgcgcattgatctgaaacaaagctcaccccaagccctggtc
ctggcaccgacgcgcgaactggccatccaggtcgccgaagcgttccaggtgtacgccgcc
cacattcccggcttccacgtgctgccgatctacggcggccaaagctacggcccgcaactg
tcggccctgcgccgcggtgtgcacgtcatcgtcggtacccctggccgcgtcatcgatcac
ctggacaagggttcgctcgacctgtccaagctgaaaacgctggtgctggatgaagccgat
gaaatgctgcgcatgggctttatcgatgatgtcgaacgcatcttgaaagaaacgccggaa
ggccatcaaacggccctgttctcggccaccatgccttccgtcatcaagcgcatcgccacg
acgtacctggtgaatccggccgaagtgacggtcgccgccaagacgggcacggccgacaac
attcgccagcgctactggctggtgtcgggcatgcataagctcgacgcattgacgcgcatc
ctggaagcggaagtgtttgacggcatgatcatctttgcccgcaccaagctgggcacggaa
gagctggctggcaagctgcaagcacgtggcttctcggctgccgccatcaatggcgacatc
cagcaagcgcagcgcgagcgcacgatccagcagttgaaagacggcaagattgacatcctc
gtggcaaccgacgtggccgcccgcggcctggacgtcgagcgcatcagccacgtcatcaac
tacgacgtgccgcacgatccggaaagctatacccaccgcattggccgcacgggccgtgcc
ggccgcagcggcgaagcgattctgttcatcaccccgcgtgaaaagagcttgctcaaagcc
atcgaacgctcgacccgccagccgatcggcatgctggaactgccgacgatccaggccgtc
aacgacgtgcgtatcgccaagttcaaggaacagatcagcgaaaccctggccttgggcgaa
ctggagcagttccagtcgctgatcgaagacttcgaacgcgaacagaacattcccgccatc
gaaatcgctgccgccctggcgaagatggcgcgtggcaatgtgcctttgttgctggacaag
aacaaggcgcgcgagcaagccacctggcaagacgaccgtcctgtgcgccaagaccgcttc
gaacgcaacgaccgtccggaacggggcgagcgcttcgagcgtaacgagcgcagcgagcgt
ggcgaacgcccggccttcccgaaaaaggaacgcatctcccgtcctgccgacgccggcatg
cagactttccgtattgaagtcggtcatcagcatggcgtgaaaccgggcaatatcgtgggc
gccatcgccaacgaagcgggcatcgattcgaaaaacatcggccgcattgaaatctatgac
gattacagcgtcctggatttgccagataccatgccgaaagaattgctggatcagctgaag
tccgtctgggttgctggtcagcaactgcgtatcagccgcgacggcgatgcaccggacctg
gcgccgcccgccgcgtcgcgcaagccgtttgccgccaaggccgcgccagcgttcaaggat
gcaccagcggacgcgggcgaggtagcacctgcgccgcgcgcgccgaagaaggaacgtcca
cgcccgggcgtgacggcctaccgtatcgaagtgggccgtgagcacgccgtgacgccaagc
aacatcgtgggcgccatcgccaacgaagcgaacctggaagccaagcatatcggccgtatc
gatatctttgacaactatagcgtgctggacctgccggaaggcatgccgccggaaatcctc
gaccacctgaaatcggtcgtcgtgtcgggccagaaattgcgcatcagcctcgatgacggc
acgacggagcgcaaaccggcgccagcgcgtcctaaatctcctccgcgtaaaacttataag
taa
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