Janthinobacterium svalbardensis: CNX70_10505
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Entry
CNX70_10505 CDS
T05119
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
jsv
Janthinobacterium svalbardensis
Pathway
jsv02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
jsv00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CNX70_10505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
jsv03021
]
CNX70_10505
Transcription machinery [BR:
jsv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CNX70_10505
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Dpoe2NT
Sigma70_r4_2
Motif
Other DBs
NCBI-ProteinID:
ATD60558
UniProt:
A0A290WV21
LinkDB
All DBs
Position
2328241..2330790
Genome browser
AA seq
849 aa
AA seq
DB search
MKNTPKTLTLSAKAPRPAAAPLAVPKTTLSYFIDNAQANPEATVTTAPTVVTVVKKSRSR
LAAVPPAESAAEAPVAEAAAEAVAEVADAAAAKTPSVKIAPGAKAPVAPRKVSESAATNK
VVTAARSKVVRAKPEAAPVTIISGAQVVSKTTDADALAAIDTSNYFLPTVKVPGRRGRKP
SEFTPENDEVAALNAVERAELKAVSKARDRKAKGGLADALGDPEASAADLERRRKQITGL
INMGKERGFLTYAEINDQLPENIIDPEAIEGIIATFNDMGIAVYERAPDAESLLLTDNVA
TVTSDDEVEAAAATALSTVDSDFGRTTDPVRMYMREMGAVALLTREGEIEIAKRIEGGLK
DMIQAISACPTTIGEIVALSQKIARDEIKVDEVVDGFVDLNESNAPAPAAAPAPAAASGD
DEEEEEEAEEEDGDANGGAAGFSSEQLAQLKKNALEKFNVISNQYDKMRKAPEGYNSKAY
IKAQEAISQELLGIRFTAKVVEKLCDTLRGQMEEVRHIERAVLELCVNKCGMPRAHFIKV
FPGNECDLEWVDREVDCKYPYSAILSRNVPAVKELQKKMIDLQARVALPLADLRKINKQM
AAGEKRARHAKREMTVANLRLVISIAKKYINRGLQFLDLIQEGNIGLLKAVDKFEYRRGY
KFSTYATWWIRQAITRSIADMARTIRVPVHMIETINKMNRISRQIMQETGSEPDLATLAV
KMEMPENKVREIMKIAKEPISMETPMGEDGDSQLGDFIEDNTTLAPLDAALHASMRNVIK
EVLDSLTPREAKVLRMRYGVEMSNDHTLEEVGKQFDVTRERIRQIEAKAMSKLRQPSRSD
KLKTFLTQN
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
atgaagaatacgccaaaaactttaacgttgtccgccaaggcgccacgcccagctgcggca
ccacttgccgtacccaaaacgactttatcttacttcatcgataatgcgcaagcgaatccg
gaagctaccgtcacgacggcgcccaccgtcgtcaccgtggtcaagaaaagccgttcgcgc
ctggccgccgtgccaccggccgagtcggctgcggaagcgcccgttgccgaagcggccgcc
gaagccgttgccgaggtggccgatgctgcagcggccaaaacgccaagcgtgaagatcgcc
cctggcgccaaggctccggtcgcgccgcgcaaggtcagcgaaagcgccgccacgaataaa
gtggtgacggcagcccgttcgaaagtcgtgcgcgccaagcctgaagcggcgcccgtgact
atcatcagcggcgcacaagtggtcagcaagaccacggacgccgatgccctggccgccatc
gatacctcgaattacttcttgccgaccgtcaaggtgccaggccgccgtggccgcaaacca
agcgaattcacgccggaaaacgatgaagtggcagcactcaacgccgtcgaacgggccgaa
ttgaaggccgtatcgaaagcgcgcgaccgcaaggccaagggcggcctggcggacgcactc
ggtgatccggaagcctcggcagcggacctggaacgccgccgcaagcagatcacgggcttg
atcaacatgggcaaggaacgcggcttcctcacctatgccgagatcaatgaccaattgccg
gaaaacatcatcgatccggaagccatcgaaggcatcatcgccaccttcaacgacatgggc
atcgccgtctacgagcgcgcccctgacgcggaaagcctgttgttgaccgacaacgtcgcc
accgtcaccagcgacgatgaagtggaagcggctgccgcgaccgccctgtcgacggtcgac
tccgatttcggccgcaccaccgaccccgtgcgcatgtacatgcgtgaaatgggtgccgtg
gcgctgctgacgcgcgaaggcgagatcgagatcgccaagcgcatcgagggcggcctgaaa
gacatgatccaggccatttccgcctgccccaccaccatcggcgaaatcgttgccttgtcg
caaaaaattgcgcgcgacgaaatcaaggtcgatgaagtggtcgacggctttgtcgacttg
aacgaaagcaatgctccggcacccgccgccgctcccgcgcccgccgccgccagcggtgac
gacgaggaagaggaagaagaagccgaggaagaagatggcgacgcgaatggcggcgcggcc
ggtttctccagcgagcaattggcgcagctgaaaaagaatgcgttggagaaattcaacgtc
atctctaaccagtacgacaagatgcgcaaggcgcccgagggttacaactcgaaagcctac
atcaaggcgcaggaagccatttcgcaagaattgctgggcatccgcttcacggccaaggtc
gtcgaaaagctgtgcgataccctgcgcggccagatggaagaagtgcgccacatcgagcgc
gccgtgctggaactgtgcgtgaacaaatgcggcatgccgcgcgcccacttcatcaaggta
ttcccgggcaatgaatgcgacctggaatgggtcgaccgcgaagtcgattgcaagtatccc
tacagcgccatcctcagccgcaacgtgcctgccgtcaaggaactgcaaaagaagatgatc
gacctgcaagcgcgcgtggccctgccgctggcggacttgcgcaagatcaacaagcagatg
gctgccggcgaaaagcgtgcgcgtcacgcaaaacgcgaaatgacggtcgccaacttgcgc
ctggtcatttcgatcgccaagaaatacatcaaccgcggcttgcaattcctcgacctgatc
caggaaggcaacatcggcttgctgaaggcggtcgataaattcgagtaccgccgcggctac
aagttctcgacctacgccacctggtggatccgccaggccatcacgcgttcgatcgccgac
atggcccgcaccatccgcgtgccggtgcacatgatcgaaacgatcaacaagatgaaccgc
atctcgcgccagatcatgcaggaaacgggcagcgaaccggacctggcgaccctggccgtc
aagatggaaatgccggaaaacaaggtgcgcgagatcatgaagatcgcgaaagagccgatt
tccatggaaacgccaatgggcgaagatggtgattcgcaactgggcgacttcatcgaagac
aacaccaccctggcaccgctggacgctgcactgcacgcgtcgatgcgcaacgtgatcaag
gaagtgctcgattcgctgacaccgcgcgaagcgaaagtgctgcgcatgcgttacggcgtg
gaaatgtcgaacgaccacacgctggaagaagtgggcaagcagttcgacgtgacgcgcgag
cgcatccgccagatcgaggcgaaagccatgagcaagctgcgccagccttcgcgttcggac
aagttgaaaacgtttttgacgcagaattaa
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