Janthinobacterium svalbardensis: CNX70_24680
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Entry
CNX70_24680 CDS
T05119
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
jsv
Janthinobacterium svalbardensis
Pathway
jsv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jsv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CNX70_24680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jsv03019
]
CNX70_24680
Enzymes [BR:
jsv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CNX70_24680
Messenger RNA biogenesis [BR:
jsv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CNX70_24680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
P-loop_SecA
AAA_19
AAA_22
Utp25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ATD62983
UniProt:
A0A290X1I2
LinkDB
All DBs
Position
complement(5545759..5547306)
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AA seq
515 aa
AA seq
DB search
MSETESTPTPSPAIAPEAAPAAAPAPAASAAPTLTFADFGLAPEIQRALTDQGYTRPTPI
QEQAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQLLLAHASSSMSPARHPVRALILTPTR
ELAVQVAENVKAYAKHTPLRSTVVFGGMDMKPQTVILRGGVEIVIATPGRLLDHIEQKNI
SLSQVQMLVMDEADRMLDMGFLPDLQRIINLLPKQRQNLMFSATFSPEIKKLAATFLNDP
LTIEVARSNQTADKVTQVVYKVTEDQKHAVVAHLLRQRDLKQVIIFSNTKIGASRLARVL
EQEGMSATAIHGDKSQQERMAALESFKKGEIDVLVATDVAARGLDISDLPCVINFDLPYN
AEDYVHRIGRTGRAGASGDAISIYSDKDERLLVDIEKLIKQSIKRGELTGFNPAPARSSD
SERRPPRRTEGSEARPARAPESRHAGDSSRDSRSAERSSTRPAFGPGARREKADPWFLKP
YEPAKAAAPAAASMAPAAAKPKQKVAALLGGLVKH
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaaccgaatcgactcctacgcccagcccggcgattgcccctgaagcggcgccc
gccgctgcacctgcacctgcagcatccgctgctcccaccctgactttcgccgactttggc
ctcgcgcctgaaatccagcgcgcactgaccgatcaaggctacacccgtccgacaccgatc
caggagcaagccattcccgtggtgctgcaagggcgcgatgtgatgggcgccgcgcaaacg
ggcacaggcaagacggccggtttttccttgccgatcatccagttgctgctggcgcatgcc
agcagcagcatgtcgccggcgcgccatccggtgcgcgcgctgatcctgacgccgacccgc
gaactggcggtgcaggtggcggaaaacgtcaaggcctacgccaagcacacgccgctgcgt
tcgacggtcgttttcggcggcatggacatgaagccgcaaacggtcatcctgcgcggcggc
gtggaaattgtcatcgccacgccgggccgcttgctcgaccatatcgagcaaaagaacatc
agcctgagccaggtgcagatgctggtcatggatgaagccgaccgcatgctggacatgggt
ttcttgccggacttgcagcgcatcatcaacttgctgccgaagcaacgccagaatctgatg
ttctcggccacgttctcgccagaaatcaagaagctggctgccaccttcctcaacgatccg
ctgacgatcgaagtggcgcgcagcaaccagacggccgacaaggtcacgcaagtggtctac
aaggtgacggaagatcagaaacacgccgtggtggcccatttgctgcgccagcgcgacctg
aagcaggtcatcatattctcgaataccaagattggcgcttcgcgcctggcccgcgtgctg
gagcaggaaggcatgagcgccacggcgattcacggcgacaagagccagcaggaacgcatg
gcggcgctggaatcgttcaagaagggcgagatcgacgtgctggtcgccaccgatgtggcg
gcgcgcggcctcgacatttccgacctgccctgcgtgatcaacttcgacttgccgtacaac
gcggaagactatgtgcaccgcatcggccgtacgggccgcgccggcgcctcgggcgacgcc
atttcgatctattcggataaagacgagcgcttgctggtcgatatcgagaaactcatcaag
caaagcatcaagcgcggcgaattgacgggcttcaatccggctcctgcccgcagcagcgac
agcgaacgccgtccgccgcgccgcaccgaaggtagcgaggcgcgtcccgcgcgcgcaccc
gagagccgccatgctggcgacagcagccgcgacagccgctctgccgagcgcagcagtacg
cgtcctgcctttggtcccggcgcccgccgcgaaaaggccgatccctggttcctgaagccg
tacgaacctgccaaggccgccgctcccgctgccgccagcatggcgcctgccgcggccaag
ccgaagcagaaggtggcagcgttgttgggtgggctagtcaaacattaa
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