Janibacter indicus: ASJ30_05505
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Entry
ASJ30_05505 CDS
T04569
Name
(GenBank) ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
jte
Janibacter indicus
Pathway
jte03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jte00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ASJ30_05505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jte03019
]
ASJ30_05505
03009 Ribosome biogenesis [BR:
jte03009
]
ASJ30_05505
Enzymes [BR:
jte01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ASJ30_05505
Messenger RNA biogenesis [BR:
jte03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ASJ30_05505
Ribosome biogenesis [BR:
jte03009
]
Prokaryotic type
rRNA processing factors
ASJ30_05505
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Trypan_PARP
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
APH01063
UniProt:
A0A1L3MFB6
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All DBs
Position
1145774..1148554
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AA seq
926 aa
AA seq
DB search
MATDNDEPVDGTTTEAPAAVPSFGLLFQPPAPAPAPARRPAPEPVDEDDESPDEDADSGS
ESSDDADSGQGEGGRRRRRRGGRGRNNRSGDEGDGDKDGSDDSDSGDSRDERGSDESDDE
AQGSAKSKGGKGGKGRGKSKKSADADDSGDDAQAAEDADSQRDDSSDDDGDSDDEGGGSS
RRRRRRRRGGGGGNGGQDDPPGTVTKVRESRRNEPQAIKGSTRLEAKKQRRREGREAGRR
RTIITEAEFLARRESVERVMVVRQHGDRTQIGVLEDGVLAEHYVSRETTSTLVGNVYLGR
VQNVLPSMEAAFIDIGKGRNAVLYAGEVNWEAQGVGNGQARRIENALSSGDSVLVQVTKD
PVGHKGARLTSQISLPGRYVVYVPEGNMTGISRKLPDTERSRLKGILKQVVPDSAGVIVR
TAAEGASEAELTADVERLTKAWDKISSKAESKKGKKGSAGGAPVLLHAEPDMTVRVIRDI
FNEDFAKMVVAGDDAWREIKGYVDDVAPDLSDRLERYTGEGDVFAAHRIDEAIAKAMDRK
VWLPSGGSLVIDRTEAMTVVDVNTGKFTGSGGNLEETVTKNNLEAAEEIVRQLRLRDIGG
IIVVDFIDMVLESNRDLVVRRLLECLGRDRTKHQVAEVTSLGLVQMTRKRVGAGLIEVFS
QECEHCHGRGIIVHSEPVAHDPGGHAGGNHGGNGNGGGGKSRRGRSKGDKDTSSQRQEPV
EEQTDANGRTAAQIAAAAHAAAIKNIAGEAGEDDVAQLEPTTAVEQSQPAEPVEQSEPEP
QQEAPKRRRGGRRAASSAGAPVALEPVDLSETPAPEPGPQPEVESTPEPQPESVTAPAPE
STPEPEPEEAPKRRRGGRRAASSAGAPVALQAVDLTAPAEPTGAPLTKVAGESGEAATTP
VADPEPAAPARRKRKRVTSEAGPPKA
NT seq
2781 nt
NT seq
+upstream
nt +downstream
nt
atggccaccgacaacgacgagccggtcgacgggaccacgaccgaagctcccgccgcagtc
ccgagcttcggactgctcttccagccccccgccccggcgccggccccggcccgccgaccg
gctcccgagccggtcgacgaggacgacgagtcgcccgacgaggacgccgactccggctcc
gagtcctcggacgacgccgattccggccagggcgaaggggggcgccgtcgccgccgtcgt
ggtggccgcggccgcaacaaccgctccggcgacgagggtgacggtgacaaggacggctcc
gacgactcggactcgggtgattcccgggacgagcgagggtccgacgagtccgacgacgag
gcccagggctccgccaagagcaagggcggcaagggcggcaagggccgcggcaagtccaag
aagtcggccgacgcggacgactcgggtgacgacgcccaggccgccgaggacgccgactcc
cagcgcgacgactcctccgacgacgacggtgactccgacgacgagggcggcggcagctcc
cgccggcgtcgccgccgtcgccgtggtggcggtgggggcaacggcggccaggacgacccg
cccgggaccgtgaccaaggtgcgcgagtcgcgccgcaacgagccccaggcgatcaagggc
tccacccgcctcgaggcgaagaagcagcgccgccgagagggccgcgaggccggtcgacgc
cgcacgatcatcaccgaggcggagttcctcgctcgccgcgagagcgtcgagcgggtcatg
gtcgtgcgccagcacggtgaccgcacccagatcggtgtcctcgaggacggcgtgctcgcc
gagcactacgtctcccgcgagacgacctcgaccctcgtcggcaacgtctacctcggccgg
gtgcaaaatgtgctgcccagcatggaggccgccttcatcgacatcggcaagggccgcaat
gcggtgctctacgccggtgaggtcaactgggaggcccagggcgtcggcaacggccaggcc
cgacgcatcgaaaatgcgctctcctccggcgactcggtcctcgtccaggtgaccaaggac
ccggtgggccacaagggtgcgcgcctcacctcgcagatctcgctgcccggccgctacgtc
gtctacgtgcccgagggcaacatgacgggcatctcgcgcaagctgcccgacaccgagcgc
tcccgcctcaaggggatcctcaagcaggtcgtcccggacagcgcgggcgtgatcgtgcgc
accgccgccgagggggcctccgaggccgagctgaccgccgacgtcgagcggctcaccaag
gcctgggacaagatcagctccaaggccgagtcgaagaagggcaagaagggctctgccggc
ggcgcgcccgtcctgctgcacgccgagccggacatgaccgtccgggtcatccgcgacatc
ttcaacgaggacttcgccaagatggtcgtggccggcgacgacgcctggcgcgagatcaag
ggctacgtcgacgacgtcgcgcccgacctgtccgaccgtctcgagcgctacacgggtgag
ggcgacgtcttcgcggcgcaccgcatcgacgaggcgatcgccaaggcgatggaccgcaag
gtctggctgccttccggcggttcgctcgtcatcgaccgcaccgaggcgatgacggtcgtc
gacgtcaacaccggcaagttcaccggctccgggggcaacctcgaggagacggtgaccaag
aacaacctcgaagccgccgaggagatcgtccggcagctgcgactgcgcgacatcggcggc
atcatcgtcgtcgacttcatcgacatggtcctcgagtccaaccgcgacctcgtcgtccgg
cgcctcctcgagtgcctcggccgtgaccgcaccaagcaccaggtcgccgaggtcacctcg
ctcggcctggtccagatgacccgcaagcgggtcggcgcgggcctgatcgaggtcttctcg
caggagtgcgagcactgccacggccgcgggatcatcgtccacagcgagcccgtcgcccac
gaccccggtggtcacgccggcggcaaccacggcggcaacggcaacggtggcggcggcaag
tcccgtcgtggccggtcgaagggggacaaggacacctcctcgcagcgccaggagccggtc
gaggagcagaccgacgccaacggccgcaccgcggcccagatcgcggcggcggcacacgcg
gcggcgatcaagaacatcgccggcgaggccggcgaggacgacgtcgcccagctcgagccc
acgacggcggtcgagcagagccagccggctgagccggtcgagcagagcgagccggagccg
cagcaggaggcgcccaagcgacgccgcggtggccgccgggccgcgtccagcgccggtgcc
cccgtcgccctcgagcccgtcgacctctccgagaccccggcccccgagcccgggccgcag
ccggaggtggagtcgacgcccgagcctcagccggagtcggtcacggctcccgcgcccgag
tcgacccccgagccggagccggaggaggcgccgaagcgccgccgtggtggccgccgagca
gcctcgagcgccggtgcgccggtggccctgcaggccgtcgacctcaccgccccggccgag
ccgacgggcgctccgctgaccaaggtcgcgggggagtccggcgaggctgcgaccacgccg
gtcgccgaccccgagccggccgccccggcccgtcgcaagcgcaagcgcgtgacctccgag
gccggcccgcccaaggcctga
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