Jatrophihabitans telluris: M6D93_05340
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Entry
M6D93_05340 CDS
T08151
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
jtl
Jatrophihabitans telluris
Pathway
jtl03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
jtl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
M6D93_05340 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
jtl03400
]
M6D93_05340 (ligD)
Enzymes [BR:
jtl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
M6D93_05340 (ligD)
DNA repair and recombination proteins [BR:
jtl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
M6D93_05340 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
Glyco_hydro_16
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
UQX89429
LinkDB
All DBs
Position
1115560..1117065
Genome browser
AA seq
501 aa
AA seq
DB search
MAGKLEEYRRKRSAQRTPEPVPPDGADGVDGADGVDAAEGAGAEPGPEHDATGNSFVVQE
HHATALHWDFRLEREGVLVSWAVPKGLPVDPKHNHLAVHTEDHPLDYAGFAGDIPAGEYG
GGNVAIWDRGTYELEKWTDSEVKFVLDGGRVSGRYVLIHTGGKNWIMHRMSPPAQEDYVP
LPQDIPPMLATLATLPPAAEDDRWAYETKWDGVRAVVYVDGGRVRVMSRNDRDVSVSYPE
LRALGEALSSTQVVLDGEIVAFSSAGRPSFSRLQKRMHVTKAAEVRRLVESDPVVYLIFD
LLYLDGHSTVDLPYEKRRELLQQMQLAGRSWQTPAHFIGGGAEVLRISQEHGLEGIVAKR
LDSKYRPGRRSADWRKVKNVRAQEVVIVGWKPGKGRREDTVGALMLAVPGPDGLRYVGNV
GTGFTDAMLDDLHTTLTRLSRKSSPLAGTLTTAEARDARFVTPKLVGEVSFGEWTPDERI
RHPVWRGLRPDKNPDQVVRES
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atggcgggaaagctcgaggagtatcgccgcaaacgcagcgcgcagcggacccccgagccc
gtcccgcccgacggtgccgacggtgtcgacggtgccgacggtgtcgacgctgccgagggc
gccggcgccgaacccggcccggaacacgacgcaaccggcaacagcttcgtcgtgcaggaa
catcacgccaccgccctgcactgggactttcgtctggagcgcgagggggtgctggtgtcc
tgggcggtgcccaagggtctgccggtagacccgaagcacaaccatctggcggtgcacacc
gaggaccatccgctggactacgccggtttcgccggggacatcccggcgggtgagtacggc
ggcggcaacgtcgccatctgggatcgtggcacgtacgaactggagaagtggaccgactcc
gaggtcaagttcgtcctcgacgggggccgggtctcgggtcgctacgtgctcatccacacc
ggcggcaagaactggatcatgcaccggatgtcaccacccgctcaggaggactacgtgccc
ttgccccaggacatcccaccgatgctggccaccctggccaccctgccgccggccgcggag
gacgacaggtgggcgtatgagaccaagtgggacggggtgcgggcggtggtctacgtcgac
gggggccgggtgcgggtgatgtcgcgcaacgatcgcgatgtcagcgtcagttacccggag
ctgcgcgcgctcggggaagcgctgtcgagcactcaggtcgtgctcgacggcgagatcgtg
gccttctcctcagccggccgacccagtttctctcggctgcaaaagcgcatgcacgtgacc
aaggcggccgaggtgagacggctggtcgagtccgatccggtggtctatctgatcttcgac
ctgctctacctggatgggcattccaccgttgatctgccgtatgagaagcgtcgcgagctg
ctgcagcagatgcagctggccggccggtcctggcagacccccgcgcacttcatcggcggc
ggtgccgaggtgctgcggatcagccaggaacacggcctggagggcatcgtcgccaagcga
ctggacagcaagtaccgaccgggtcgccggtccgccgactggcgcaaggtcaagaacgtc
cgcgcccaggaagtggtgattgtgggctggaagccgggcaagggccgtcgggaggacacc
gtcggcgccctcatgctcgccgtccccggcccggacggcctgcggtacgtcggcaatgtc
ggcaccggattcaccgacgcgatgctcgacgatctgcacaccaccctcacccggctgagc
cgcaagtcctccccgctggccggcacgctgaccaccgccgaggccagggacgcacggttc
gtcacgcccaagctcgtgggcgaggtcagcttcggtgagtggacacccgatgagcgaatc
cggcacccggtctggcgaggactacgtccggacaagaaccctgatcaggtcgtgcgggaa
agctga
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integrated database retrieval system
