Janibacter terrae: V3C34_07470
Help
Entry
V3C34_07470 CDS
T10608
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
jtr Janibacter terrae
Pathway
jtr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jtr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V3C34_07470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jtr03019
]
V3C34_07470
03009 Ribosome biogenesis [BR:
jtr03009
]
V3C34_07470
Enzymes [BR:
jtr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
V3C34_07470
Messenger RNA biogenesis [BR:
jtr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
V3C34_07470
Ribosome biogenesis [BR:
jtr03009
]
Prokaryotic type
rRNA helicases
V3C34_07470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
HEM4
UvrA_inter
adh_short
Cas3-like_C_2
AAA_22
DUF5817_CT
Motif
Other DBs
NCBI-ProteinID:
XAS62127
LinkDB
All DBs
Position
1502537..1504279
Genome browser
AA seq
580 aa
AA seq
DB search
MSTDSTPPPEPDQPTFADLGLDDRVVRALKDIGYETPSPIQAATIPALLQGRHVVGLAQT
GTGKTAAFALPVLSQLDPKQKSPQALVLAPTRELALQVCEAFEKYASRIPGVRVLPVYGG
QGYGVQLSALRRGVHVVVGTPGRIMDHLEKGTLDLSQLRFLVLDEADEMLKMGFAEDVET
ILAETPEDKHVALFSATMPAQIRRISKKHLTDALEITVERKTATAPNITQRYLVVSYPQK
VDALTRILEVENFEAMIVFVRTKHETETLAERLRARGFSAAAINGDVAQAQRERTVAQLK
SGRLDILVATDVAARGLDVERISHVVNYDIPTDTESYVHRIGRTGRAGRSGDAISFVTPR
ERHLLKSIEKATRTTLAEMPMPSPEDVNATRLGRFDDRITAALASSDLATFRDVIAHYVE
EHDVPEGDVAAALAIVLQGDEPMLMGPDPVRPPKRERTERPPRRDDRGDNPDRAKGGKRG
PRGASGPMGTYRIAVGRRHKVEPRQIVGALANEGGLSRQDFGHIDIRGDHSIVELPSPLP
PGTADRLQSTRISGQLIELSESGEPGGRRDRKPHRKGPRT
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
gtgagcaccgacagcacgccccctcccgagcccgaccagccgaccttcgccgacctcggc
ctcgacgaccgcgtggtccgggcgctcaaggacatcggctacgagaccccctcgccgatc
caggccgcgacgatccccgcgctcctccagggacgccacgtcgtcgggctcgcgcagacc
ggcacgggcaagaccgcggccttcgcgctgccggtcctcagccagctggaccccaagcag
aagtcgccccaggcactcgtcctcgcgcccacccgcgagctggcgctgcaggtctgcgag
gccttcgagaagtacgcctcgcggatccccggcgtgcgcgtgctgcccgtctacggcggg
cagggctacggggtgcagctgagcgcccttcgccgtggtgtgcacgtcgtcgtgggcacc
cccggccggatcatggaccacctcgagaagggcacgctcgacctgtcgcagctgcgcttc
ctcgtcctcgacgaggccgacgagatgctcaagatggggttcgccgaggacgtcgagacg
atcctcgccgagacacccgaggacaagcacgtcgcgctgttctccgcgacgatgcccgcc
cagatccgccgcatctccaagaagcacctgaccgacgcgctcgagatcaccgtcgagcgc
aagactgcgacggcgcccaacatcacccagcgctacctcgtcgtgtcctacccgcagaag
gtggacgcgctcacccgcatcctcgaggtggagaacttcgaggcgatgatcgtcttcgtg
cggaccaagcacgagacggagacgctcgccgagcggctgcgagcccgaggcttctcggcc
gcagcgatcaacggcgacgtcgcccaggcccagcgcgagcggaccgtggcccagctcaag
tccggccggctcgacatcctcgtggccaccgacgtcgccgcccgcggtctcgacgtcgag
cggatcagccacgtcgtcaactacgacatccccacggacaccgagtcctacgtgcaccgc
atcggtcgcacgggtcgggccgggcgctccggtgacgcgatctccttcgtcaccccccgc
gagcgccacctgctgaagtcgatcgagaaggcgacccgcacgaccctggccgagatgccg
atgccgtcccccgaggacgtcaacgccacacggctgggccggttcgacgaccggatcacg
gccgcgctcgcctcgtccgacctcgcgaccttccgcgacgtcatcgcgcactacgtcgag
gagcacgacgtgccggagggcgacgtcgccgccgccctggcgatcgtcctgcagggcgac
gagccgatgcttatgggtcccgaccccgtgcgtccgcccaagcgcgagcggaccgagcgc
ccaccgcgtcgtgacgaccgtggcgacaacccggaccgggcgaaggggggcaagcgcggc
ccacgcggtgcctccggcccgatgggcacctaccggatcgccgtggggcgccggcacaag
gtcgagccgcgtcagatcgtcggcgcgctcgccaacgagggcggcctgagccgtcaggac
ttcgggcacatcgacatccgcggggaccactcgatcgtcgagctgccgtcgccgctgccg
cccggcacggccgaccgcctgcagagcacccgcatctccggccagctcatcgagctcagc
gagtccggggagcccggcggacgacgtgaccggaagccgcaccgcaagggtccgcgcacc
tga
DBGET
integrated database retrieval system
