Janibacter terrae: V3C34_15905
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Entry
V3C34_15905 CDS
T10608
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
jtr Janibacter terrae
Pathway
jtr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
jtr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
V3C34_15905 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
jtr03400
]
V3C34_15905 (mfd)
Enzymes [BR:
jtr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
V3C34_15905 (mfd)
DNA repair and recombination proteins [BR:
jtr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
V3C34_15905 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
RecG_dom3_C
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
XAS60399
LinkDB
All DBs
Position
complement(3192394..3196029)
Genome browser
AA seq
1211 aa
AA seq
DB search
MTSSLAPLLSAIAGLPGLADIPRHRDASDLVDIVAPTGLRAPTVACIGGDRASHAPRLVV
TSTAREADDIATALGELVGHEQVVTFPSWETLPHERLSPRSDTVGRRLAVLRRLAHPDAG
EGHGRPGYVIASVRAVLQPIAKGLADLEPVRLRVGDEAALTEVTEALAGAAYVRTDLVER
RGEFAVRGGILDVFPPTEEHPVRVEFFGDTVDEIRWFKVADQRSLDTAIEMWAPPCREVL
LTDTVRRRAATLAGELPGVADMLLKVAEGIAVEGMESLAPALVDGMESVLDVLPQGAGVV
VLDPERVRARAHDLVSTSEEFLQASWANAAAGNAVPIDLEGVLGTASHWTLGQARDHALE
IGLPWWSVTPFAVDDELAAIAADLDDRVDHDHVGLRVPAEEPPHFRGNTEAAIAQLREWT
GEGWQVLIATDGPGLVKRVTEVLGDAGVPTRVADEGEPVTLTAGVVALTRASLGTGFVVP
ERRFAVLTEADLLGSSGAGASTRDMRRMPSRRRKQVDPLQLRPGDHVVHEQHGVGSFVEM
IQRTVQGATREYLVIEYAPSRKGHPGDRLFVPTDQLDQVTRYVGGDAPPLNKMGGSDWHK
TKSRAKRHVRQIAGELIRLYSARMATPGHAFGPDTPWQRELEDAFAHIETPDQLTTIDEV
KDDMEKTVPMDRLICGDVGYGKTEIAVRAAFKAIQDGKQVAVLVPTTLLVQQHLNTFSER
YAGFPVTVKALSRFQTDKQAKEVLEGMESGAVDLVIGTHRILGNEVKFKDLGLVIIDEEQ
RFGVEHKEQLKAMRTNVDVLAMSATPIPRTLEMAVTGIREMSTLATPPEERHPVLTFVGG
YEEKQVAAAIHRELMREGQVFYVHNNVSTIERTAARIRELVPDARVETAHGKMGEHRLEQ
VVLDFWERRFDVLVCTTIVETGLDISNANTLILDRADRFGLSQLHQLRGRVGRGRERAYA
YFLYPPDKPLTEMAHDRLETIASNTDLGAGMQVAMKDLEIRGAGNLLGGEQSGHIAGVGF
DLYVRMVGEAVADFKGEGEAAPAEVKIELPVDAHLPHEYIPGERLRLEAYKKLASAETEA
DLTEILEELTDRYGQPPEPVRNLVEVARLRIVVRSAGLTDVVAQGANVRFAPARLRESQE
LRLARLYPRSSYKEGTQTVLVPKPTTARIGGTPLRDTAVLTWATDLIRQVMLDDVIVDSG
ATAPRDTSRSR
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atgacttcctccctcgccccgctcctgagtgcgatcgccggcctgcccggtctcgccgac
atcccacgacaccgcgacgccagcgacctggtcgacatcgtcgcgcccaccggtctgcgg
gcgcccacggtcgcctgcatcggtggcgaccgcgcctcgcacgcaccgaggctcgtcgtc
acctcgaccgcgcgcgaggccgacgacatcgccaccgcgctcggcgagctcgtcggccac
gagcaggtggtcaccttcccgagctgggagacgctgccgcacgagcggctcagcccccgc
agcgacaccgtcggccgtcggctggccgtcctgcgccggctggcgcaccccgacgcgggg
gagggccacggccggcccggttacgtcatcgcctcggtccgggccgtcctgcagccgatc
gccaagggcctggccgacctcgagccggtgcggctgcgcgtcggcgacgaggcggcgctc
accgaggtcaccgaggcgctcgcgggtgccgcctacgtgcgcaccgacctcgtcgagcgc
cgcggtgagttcgcggtccgcggcggcatcctcgacgtcttcccgccgaccgaggagcac
cccgtccgggtcgagttcttcggcgacacggtcgacgagatccggtggttcaaggtcgcc
gaccagcgcagcctcgacacggcgatcgagatgtgggccccgccctgccgggaggtcctg
ctgaccgacaccgtgcgtcgacgcgcggcgaccctcgcgggggagctgcccggcgtcgcc
gacatgctcctcaaggtcgccgagggcatcgccgtggagggcatggagtcactcgcgccc
gccctcgtcgacggcatggagtcggtcctcgacgtcctgccgcagggcgccggtgtcgtc
gtcctcgaccccgagcgggtgcgcgctcgcgcgcacgacctcgtctcgacgagcgaggag
ttcctccaggccagctgggccaacgccgccgcgggcaacgccgtcccgatcgacctcgag
ggcgtgctcggcacggcctcccactggaccctggggcaggcccgcgaccacgcgctcgag
atcgggctgccgtggtggagcgtcacccccttcgccgtcgacgacgagctcgcggccatc
gccgccgacctggacgaccgggtcgaccacgaccacgtgggcctgcgggtgccggccgag
gagccgccgcacttccgcggcaacaccgaggccgcgatcgcccagctgcgcgagtggacc
ggggagggctggcaggtgctgatcgccaccgacggcccgggactcgtcaagcgcgtcacc
gaggtcctcggtgacgcgggcgtcccgacccgcgtcgcggacgagggggagccggtcacg
ctcacggcgggcgtcgtcgcgctcacccgggccagcctcggcacggggttcgtcgtgccc
gagcggcggttcgccgtgctcaccgaggccgacctgctcggctcgagcggggccggggcg
agcacgcgcgacatgcgccggatgccctcgcgccggcgcaagcaggtcgacccgctccag
ctgcgtcccggggaccacgtcgtccacgagcagcacggcgtcgggtccttcgtcgagatg
atccagcggaccgtgcagggcgcgacccgtgagtacctcgtcatcgagtacgccccgtcc
cgcaaggggcaccccggcgaccggctcttcgtgccgaccgatcagctcgaccaggtgacc
cgctacgtgggcggcgacgccccgccgctcaacaagatgggcggcagcgactggcacaag
accaagtcgcgcgccaagcgccacgtgcgccagatcgccggtgagctcatccgtctctac
agcgcgcgcatggcgacgcccggccacgccttcggcccggacaccccgtggcagcgcgag
ctcgaggacgccttcgcccacatcgagacgcccgaccagctgaccaccatcgacgaggtc
aaggacgacatggagaagacggtcccgatggaccgcctgatctgcggcgacgtcggctac
ggcaagaccgagatcgcggtccgggcggccttcaaggcgatccaggacggcaagcaggtc
gccgtcctggtaccgacgaccctgctcgtgcagcagcacctcaacaccttctccgagcgg
tacgccggcttccccgtcacggtcaaggcgctcagccgcttccagaccgacaagcaggcc
aaggaggtgctcgagggcatggagtccggtgcggtcgacctcgtcatcggcacccaccgg
atcctcggcaacgaggtgaagttcaaggacctcggcctggtcatcatcgacgaggagcag
cgcttcggcgtcgagcacaaggagcagctcaaggcgatgcgcaccaacgtcgacgtgctc
gccatgtcggccacgccgatcccgcgcaccctcgagatggcggtcacgggcatccgcgag
atgtcgacgctcgccacgcccccggaggagcgccacccggtgctcaccttcgtcggcggc
tacgaggagaagcaggtcgccgccgcgatccaccgcgagctcatgcgcgagggccaggtc
ttctacgtgcacaacaacgtcagcacgatcgagcggacggcggcccgcatccgcgagctc
gtgcccgacgcccgcgtcgagaccgcccacggcaagatgggcgagcaccggctcgagcag
gtcgtcctcgacttctgggagcggcgcttcgacgtcctcgtgtgcacgacgatcgtcgag
accggcctggacatctccaacgccaacacgctgatcctcgaccgcgccgaccgcttcggc
ctgagccagctgcaccagctgcgcggccgcgtcgggcgcgggcgcgagcgcgcctacgcc
tacttcctctacccgccggacaagccgctcacggagatggcccacgaccgcctcgagacg
atcgcgagcaacaccgacctcggcgccggcatgcaggtggcgatgaaggacctcgagatc
cgcggcgcgggcaacctgctcggcggcgagcagtccggccacatcgcgggcgtcggtttc
gacctgtacgtgcggatggtcggcgaggccgtcgcggacttcaagggcgaaggggaggcc
gcgccggccgaggtcaagatcgagctgcccgtcgacgcccacctgccgcacgagtacatc
ccgggggagcggctgcggctggaggcgtacaagaagctcgcgtccgcggagaccgaggcc
gacctcaccgagatcctcgaggagctcaccgaccgctacggccagccgccggagccggtg
cgcaacctcgtcgaggtcgcccgcctgcggatcgtcgtgcgctcggccggactgaccgat
gtcgtggcccagggggccaacgtgcgcttcgccccggcccggctccgcgagagccaggag
ctgcggctggcccgcctctaccccaggtcgagctacaaggagggcacccagacggtgctc
gtccccaagcccacgaccgcgcgcatcggggggaccccgctgcgggacaccgcggtgctc
acgtgggccactgacctcatccgtcaggtcatgctcgatgatgtcatcgtggacagcggg
gcgacggcgccccgagacacctcgcgctcgcgctga
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