Jeongeupia wiesaeckerbachi: R0382_000349
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Entry
R0382_000349 CDS
T11114
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
jwk Jeongeupia wiesaeckerbachi
Pathway
jwk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jwk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
R0382_000349
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jwk03019
]
R0382_000349
Enzymes [BR:
jwk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
R0382_000349
Messenger RNA biogenesis [BR:
jwk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
R0382_000349
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Ilar_coat
Motif
Other DBs
NCBI-ProteinID:
XVK48922
LinkDB
All DBs
Position
complement(363120..364496)
Genome browser
AA seq
458 aa
AA seq
DB search
MSFSTLGLAREVQQAVEAMGYENPTPIQSKAIPLVLAGRDVLGAAQTGTGKTAAFTLPIL
TLLAPHASNSVSPAKHPVRALILTPTRELADQVGENVKTYSQFMPLRSHIVFGGVDIKAQ
IPALRAGVEVLIATPGRLLDHVQQKSVNLSQVEILVLDEADRMLDMGFILDIKKIISMLP
KRKQTLLFSATFSPEIKKLSAEFLNNPELVEVARQNATNDNVEQLLHPCETHRKPALLAH
LIRTHQMGQVIVFNRTKIGADSVSRELKRAGFNCEAIHGDREQRARLETLQRFKDGTLQI
LVATDVAARGLDISELPYVVNFELPNNPEDYVHRIGRTGRAGAKGVAISLVDPGEDKAYG
LIQKLIKKELPLTPVPGYSPGTTPVQPVQPERPNRGERRHPEERRDSVEARAAAAPRPSR
PRGNDIDVPLPTKPLPSLPKRGQQIAALFLPPKHPVSK
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atgagtttttcgaccctgggcttggcccgggaagtacagcaggccgtcgaggccatgggt
tacgaaaacccgacgccgattcagtccaaagccattccgctggtgctcgccggccgtgac
gtgctcggtgcagcacagaccggtaccggcaagacggctgcgttcacgctgccgatcctg
actctgctggcgccgcatgccagcaacagcgtttcgccggccaagcatccggtgcgtgcg
ctgatcctgacgccgacgcgcgagctggccgaccaggttggcgaaaacgtcaaaacctat
tcgcagttcatgcctttacgcagtcatatcgtgtttggcggcgtcgacatcaaggcgcag
attccggcgttgcgtgccggcgtcgaagtgctgattgctacgccgggccggctgctcgac
cacgtgcagcagaagtcggtgaacctgtcgcaagtcgagatcctggtgctggacgaagcc
gaccgcatgctcgacatgggtttcatcctcgacatcaagaagatcatctcgatgttgccc
aagcgcaagcagacgctgctgttctcggcgacgttctcgcccgaaatcaagaagctgtcg
gccgaattcctgaacaatccggaactggtcgaagtggcgcggcagaacgcgaccaacgac
aacgtcgagcagctgctgcacccgtgcgaaacgcatcgcaagccggcgctgctggcgcac
ctgatccgcacgcaccagatgggccaggtcatcgtcttcaaccgcaccaagatcggcgcc
gatagcgtatcgcgcgaactcaagcgggccggtttcaattgcgaggccatccatggcgat
cgcgaacagcgcgcccggctcgagacgctgcagcgcttcaaggacggtacgctgcagatt
ctggtggcgaccgacgtcgccgcgcgtggcctggatatttccgagctgccctatgtggtc
aacttcgagctgccgaacaaccccgaggactatgtccaccggatcggccggaccggtcgc
gctggtgccaagggcgtggcgatctcgctggtggatccgggcgaggacaaggcttacggc
ctgatccagaagctgatcaagaaagaactgccgctgacgccggtaccgggttattcaccg
ggtacgacgccggtgcagccggtgcagccggagcgcccgaatcgcggtgaacgccgccat
ccggaagagcgccgcgacagcgttgaagcccgtgccgcagcagcgccgcgaccctcgcgt
ccgcgcggcaacgacatcgacgtgccgctgccgaccaagccgctgccgagcctgcccaag
cgtgggcagcagatcgccgcgctgttcctgccgccgaagcacccggtcagcaagtga
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