Jeongeupia wiesaeckerbachi: R0382_001797
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Entry
R0382_001797 CDS
T11114
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
jwk Jeongeupia wiesaeckerbachi
Pathway
jwk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
jwk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
R0382_001797 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
jwk03400
]
R0382_001797 (sbcB)
Enzymes [BR:
jwk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
R0382_001797 (sbcB)
DNA repair and recombination proteins [BR:
jwk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
R0382_001797 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
R0382_001797 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
R0382_001797 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
XVK50338
LinkDB
All DBs
Position
complement(1860953..1862377)
Genome browser
AA seq
474 aa
AA seq
DB search
MSTSFFWHDYETFGVVPRRDRPAQFAGIRTDLELNETGAPVEIFCQPTPDWLPDPESCLL
TGITPQHCLERGVSEREFAAGIEAELAQPGTVGVGYNTIRFDDEVTRFLFWRNLYDPYAR
EWQNDCGRWDLLDTVRTTWALRPEGINWPSHEDGRPSFKLEDLSRANGLAHEAAHDAVSD
VRATIALARLIRSHQPKLFDFCLSLRKKDAVLAQIGSDPKPFLHVSGMFGTDRGCIAAVW
PLAWHPSNKNELIVWDLAFDPCELFALDAETIRTRMFSRADALPEGVSRLPVKTIHINKS
PIVIGNLKTLQPAQAERWGVDFDAIERHAALLRDAPALPWAQVFKRDLPPTADVDQDLYV
GFLSNNDRRTLERLRGLDGEALAATRASFDDRRLDELLFRYRARNFPASLTEAELDRWAQ
LRSERLFEGRDGYLTLEDYCGRIDTLAESADERGEAILAALYDYAESIAPEFGG
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atgagcactagctttttctggcacgactatgaaaccttcggcgtcgtgccgcgccgcgac
cggccggcacagttcgccggcatccgcaccgatctcgaactgaacgagaccggcgcgccg
gtcgagattttctgccagccgacgccggactggctgcccgaccccgaatcctgtctgctg
accggcatcacgccgcagcactgcctcgaacgcggcgtgagcgaacgcgagttcgccgcc
ggcatcgaggccgaactggctcagccgggcaccgttggcgtcggctacaacaccatccgc
ttcgacgacgaagtcacccgcttcctgttctggcgcaatctgtacgacccgtacgcgcgc
gaatggcagaacgattgcggccgctgggacttgctcgacaccgtacgcacgacctgggcg
ctgcggcccgaaggcatcaactggccgagccacgaagatggccgaccgagcttcaagctt
gaggatctgtcgcgcgccaacggccttgcgcacgaagcggcgcacgacgcggtctcggac
gtgcgggcaacgatcgcactggcgcggctgatccgctcccaccagcccaagctgttcgac
ttctgcctgagcctgcgcaagaaagatgcggtgctggcgcagatcggcagcgaccccaag
cctttcctgcatgtttccggcatgttcggcaccgatcgcggctgtatcgccgccgtctgg
ccgctcgcctggcatccgagcaacaagaatgaactgatcgtctgggatctggcgttcgac
ccgtgcgagctgtttgcgctcgatgccgagaccatccgcacgcggatgttcagccgcgcg
gatgcactgcccgaaggcgtgagccggttgccggtcaaaaccatccatatcaacaagtcg
ccgatcgtcatcggcaatctgaaaacgctgcagccggcccaagccgaacgctggggtgtc
gatttcgacgcgatcgagcgccacgccgcgctattgcgcgatgcgccagcgctgccgtgg
gcgcaggtgttcaagcgcgatctgccgccgaccgccgacgtcgaccaggatctgtacgtc
ggctttctgtcgaacaacgaccggcgcacgctggaacggctgcgcggcctcgacggcgaa
gcgctcgccgcgacgcgcgccagcttcgacgaccgccgcctggacgagctgctgttccgc
taccgcgcacgcaacttccccgcgtcgctgaccgaggccgagctcgatcgttgggcgcag
ctgcgcagcgagcgcctgttcgaaggccgcgacggctacctgacgctggaggactactgc
ggccgcatcgacacgctggccgagtccgcagacgaacgcggcgaagccatcctcgccgcg
ctatacgactacgccgaatccatcgcgcccgagttcggcggatga
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