Jeongeupia wiesaeckerbachi: R0382_002930
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Entry
R0382_002930 CDS
T11114
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
jwk Jeongeupia wiesaeckerbachi
Brite
KEGG Orthology (KO) [BR:
jwk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
jwk03016
]
R0382_002930
Enzymes [BR:
jwk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
R0382_002930
Transfer RNA biogenesis [BR:
jwk03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
R0382_002930
Prokaryotic type
tRNA splicing ligases
R0382_002930
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
XVK51431
LinkDB
All DBs
Position
3009543..3010751
Genome browser
AA seq
402 aa
AA seq
DB search
MPIIKSFAGARVPVKVWTDDIAPDAIQQLKNVAALPIIHSHVAAMPDVHYGTGATVGSVI
PTRSAIIPAAVGVDIGCGMNAVRTSLTASDLPESLSRLRATIEAAVPVGFEQHAWDKVRG
SAHQRIARPLDDRLDRIVGKHPGLMKMQRKFAQTWVCQIGTLGGGNHFIELCLDEAQRVW
VMLHSGSRGTGNVIGRYFIDAARKDMRRHQINLPDRDLAYFSAGSTWFDDYVEALEWGQD
YALVNRREMMRLVVEAMRPFLPAFTLTDEAINCHHNYVAREVHFGEKLFITRKGAIAAHA
GQLGIIPGSMGAKSYIVRGRGNADSFCSCSHGAGRQMSRSEAKRRFNRFDLATQTEGIEC
RKDGGVVDEIPAAYKDIDAVMAHQTDLVDVVHTLKQVLCIKG
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atgccaatcatcaaaagctttgccggcgccagggtgccggtcaaagtctggaccgacgac
attgcgccggacgcgatccaacaactgaaaaacgtcgctgcattacccatcatccacagc
catgttgccgccatgccggatgtgcattacggcacgggcgcgacggtgggctcggtgatt
ccaacccgctccgccatcattccggcggccgtcggcgttgatatcggctgcggcatgaat
gcggtgcgtacctcgctgaccgcgagtgatctgcccgaaagcctgtctcggctgcgcgcc
accatcgaggcggccgtgccggtcggtttcgagcagcatgcatgggacaaggtgcgaggc
tcggcccaccagcgaattgcccggccgctcgacgaccggctcgaccgcatcgtcggcaaa
catccgggcctgatgaagatgcagcgcaagtttgcccagacctgggtctgccagatcggc
actctgggcggtggcaaccacttcatcgaactgtgtctggacgaggcgcagcgcgtctgg
gtgatgctgcactcgggcagtcgcggtaccggcaacgtgatcggtcgttacttcatcgac
gctgcccgcaaggacatgcgccggcaccagatcaatctgcctgatcgtgatctggcctac
ttcagtgccggttcgacctggttcgacgattacgtcgaggcgctggagtgggggcaggac
tacgcactggtcaaccgccgcgaaatgatgcggctggtggtcgaggcaatgcgaccgttc
ctgcccgcgttcacgctgaccgacgaagcgatcaactgccaccacaactacgtggcgcgg
gaagtgcactttggcgagaagctgttcattacccgcaagggtgcgattgcggcgcacgcc
ggccagctaggcatcattccaggctcgatgggcgccaagagttacatcgtgcgcgggcgg
ggcaatgccgattcgttctgctcgtgttcgcacggcgccgggcggcagatgagccgcagc
gaagccaagcgccgcttcaatcgcttcgacctcgccacccagacagagggcatcgagtgc
cgcaaggatggcggtgtggttgatgaaataccggcggcgtacaaggacatcgacgccgtc
atggcccaccagaccgatctggtcgacgtggtccacactctgaagcaagtgttgtgcatc
aaaggctga
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