Jeongeupia wiesaeckerbachi: R0382_002970
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Entry
R0382_002970 CDS
T11114
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
jwk Jeongeupia wiesaeckerbachi
Pathway
jwk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
jwk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
R0382_002970 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
jwk03400
]
R0382_002970 (mfd)
Enzymes [BR:
jwk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
R0382_002970 (mfd)
DNA repair and recombination proteins [BR:
jwk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
R0382_002970 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
AAA_30
ERCC3_RAD25_C
CTE_SPB4
Motif
Other DBs
NCBI-ProteinID:
XVK51471
LinkDB
All DBs
Position
complement(3050728..3054135)
Genome browser
AA seq
1135 aa
AA seq
DB search
MNSPVLPRAGERLLLATPHGSADAWLLDQLGNQASTLLILTASAQDAARLGDEIRFFAPK
QTVVQLPDWETLPYDHLSPHHDLISERLASLWQIREQQADIIIVPVQTALGRLAPVEYLA
AYTFNITKGSAFDPEKLRTDLVFAGYNHVTQVFSPGEFAIRGGLVDLYPMGSTLPFRLDL
FGDEIETIRTFDVDTQRSLYPVPDIRLLPAREFPLDEAGRTRFRQRFRETFEGDPSKSQL
YKDISNGVTPAGIEYYLPLFFDHTATLFDYLAKDTVVALHGKVLDAAESFWRDTQDRYRN
LSGEKSRPILKPGELYLAPDELFGLIKSLRRVELIGDGNEPRPTSALPPLAVDRRADNPL
ARLESFVAGYLGKVLVTAESLGRRETMAQFFGEYGVKPVLVEAWSDALAASKTRLMLAAA
PLYNGFILDAEGLAIITEADLYPTVAQGRGRKQQKRSNTDAMLRDLSELKIGDAVVHEAH
GIGRYMGLTSMDLGEGETELLLLEYAGGDKLYVPVSQLHVISRYSGGAADAAPMHRLGTG
TWEKAKRRAAEQVRDTAAELLNLYARRAARQGHAFEWKHQDYEAFAEGFGFDETPDQAAA
IEAVLVDMRVSQPMDRLVCGDVGFGKTEVALRAAFAAVAGGKQVAVLVPTTLLAEQHFQT
FADRFADWPIKIAELSRFRSGKETTAALKGLADGTVDIVIGTHKLVQPDIQFKNLGLVII
DEEHRFGVRQKEQLKALRANVDVLTLTATPIPRTLAMSLEGIRDFSVIATAPSKRLSVKT
FVAKFGEGIIREAVLRELKRGGQVFFLHNEVDTIENMREKLGALLPEARIGVAHGQMRER
ELEHVMRDFHAQRFNLLLCTTIIETGIDIPNANTIVMNRADKFGLAQLHQMRGRVGRSHH
QAYAYLLVPDVEGLTVDAKKRLEAIQMMEELGSGFYLAMHDLEIRGAGEVLGDSQSGEMQ
EIGFSLYSQMLNEAVKSLKKGQEPDLSQPLGITTEINLHAPALLPNEYCPDVHERLSLYK
RLANCETPDELDDILQELVDRFGLLPDPAKVLLDCHRLRMHAKPMGIQKIDAADSAIVLT
FAPNTVVEPFKLIQLIQSKKNYKMLPPDRMRIEGNWPEPPLRAVRIKELLVELTK
NT seq
3408 nt
NT seq
+upstream
nt +downstream
nt
atgaactccccagtcctgccccgcgccggtgagcgcctgcttcttgccaccccacacggg
tcggccgacgcctggctcctcgatcagctgggcaaccaagcctcgaccctgctcattctg
accgcctcggcgcaagacgcagcccgtctcggcgatgaaatccgcttttttgcaccgaag
cagaccgtcgtacagctgccggactgggaaacactgccttacgaccacctcagcccgcac
cacgacctgatttccgaacggcttgccagcctctggcaaatccgcgagcagcaagccgac
atcatcatcgttccggtacagaccgcgctcggccggctcgcgccggtcgaatatcttgcc
gcctacacgttcaatatcaccaagggcagcgcgttcgaccccgaaaagctccgcaccgat
ctggtttttgccgggtacaaccatgtcacccaggtcttcagccccggcgaattcgccatc
cgtggcggcctggtcgacctctacccgatgggatcgacactgccctttcgcctcgacctg
tttggcgacgaaatcgagacgatccgcacctttgacgtcgatacccagcgcagcctctac
ccggttccggacatccgcttgctgccggcgcgggagttcccactcgatgaagcgggtcgt
acccgtttccgtcaacgctttcgcgaaacattcgaaggggatccgagtaagtctcaactt
tacaaggacatcagcaatggcgtaacgccggcaggcatcgagtactacctgccgctgttt
tttgaccacactgcgacgctgttcgactacctggcgaaagacaccgttgtcgctctgcac
ggcaaagtgctcgatgcagccgaaagcttctggcgagacacgcaagaccgctatcgcaac
ctgtccggcgagaaaagccgccccatcctcaagcccggcgaattgtatctggcaccggac
gagctcttcggtctgatcaagtccttgcgccgtgtcgagctgatcggcgacggcaacgag
ccgcgcccaacatcggccttgccgccgttggccgtcgaccgacgcgccgacaatccactg
gcgagactggaaagctttgtcgccggctacctgggcaaggtgctcgtcacggcggagagt
ctgggtcgccgggagacaatggcgcagtttttcggcgagtacggcgtcaagcccgtactg
gtcgaggcgtggtcggatgcgctagccgcgagcaagacccggctgatgctcgccgccgcg
ccgctgtacaacggcttcatcctcgacgccgaaggcctggccatcatcaccgaggccgac
ctgtacccgacagtggcgcagggccgcggacgcaagcagcaaaagcgcagcaataccgac
gccatgctgcgcgacctgtccgaactcaagatcggcgacgccgttgttcacgaggcgcat
ggcatcgggcgctatatgggtctgacgtcgatggacctcggtgaaggcgaaaccgagctg
ctgctgcttgagtacgccggcggcgacaagctctacgtgccggtatcgcaactgcacgtg
atcagccgctactcgggcggcgctgccgacgctgcgccgatgcaccggctcggcaccggc
acctgggaaaaagccaagcgccgtgcggccgagcaggtgcgcgataccgcggccgaacta
ctgaacctgtacgcgcgccgcgcggcacggcagggacacgcattcgaatggaagcaccag
gattacgaagccttcgccgaaggttttggctttgacgaaacgcccgaccaggccgctgcg
atcgaggccgtgctggtcgacatgcgcgtcagccaacctatggaccggctggtgtgtggc
gatgtcggcttcggcaagaccgaagtcgcattgcgggcagcgtttgccgcggtcgccggc
ggcaaacaggtcgccgtactggtgccgacgacactacttgccgaacagcacttccagacc
tttgccgaccgatttgccgactggccgatcaagattgccgagctgagccgcttccgctcc
ggcaaggagaccaccgccgcactcaagggcctggccgacggcactgtcgacatcgtgatc
ggcacgcacaagctggtccagccggacatccagttcaaaaatctcggcctcgtgatcatc
gacgaggaacaccgtttcggcgtacggcagaaagagcaattgaaggcgctgcgcgccaac
gtcgatgtactgacgctgacggcgacgccgattccgcgcacgctggcgatgagtctcgag
ggtattcgcgatttctcggtcatcgccaccgcaccgtcgaaacgactgtcggtcaagacc
tttgtcgccaaattcggcgaaggcatcatccgcgaggcggtgttgcgcgaactcaagcgc
ggcggtcaggttttcttcctgcacaacgaagtcgacacgatcgaaaacatgcgcgagaaa
ctcggcgcactactgcccgaggcgcgcatcggcgtcgcgcacggccagatgcgcgagcgc
gagctggaacatgtgatgcgcgatttccatgcccagcgcttcaacctgctgttgtgtacg
acgatcatcgagaccggcatcgacattccgaacgccaacaccatcgtcatgaaccgcgcc
gataaattcggcctggcgcaattgcaccagatgcgcggacgggtcggccgctcgcaccac
caggcctatgcctatctgctcgtccccgatgtcgaaggcctgaccgtcgacgcgaaaaaa
cgcctcgaagccatccagatgatggaagagctgggctcgggcttctacctggcgatgcac
gacctggaaatccgcggcgccggcgaggtgctgggcgattcgcaatcgggcgaaatgcag
gaaatcggcttctcgctgtacagccagatgctcaacgaggcggtgaaatcgctgaaaaag
ggccaggaaccggatctgtcgcaaccgctcggcatcaccaccgaaatcaatctgcatgcg
ccagcgctactgcccaacgagtactgccccgacgttcatgagcgactatcgctgtacaag
cgattggcgaactgcgaaacaccggacgaactcgacgacatcctgcaagagttggtcgac
cgcttcggactgctgcccgacccggccaaggtgctgctcgactgccaccggctgcgcatg
cacgccaagccgatgggcatccagaagatcgacgcggccgactcggccattgtgctgacg
ttcgcaccgaacaccgtcgtcgagccgttcaagctgatccagctgattcaaagcaaaaag
aattacaagatgttgcctcccgaccggatgcggatcgaaggcaactggcccgaaccccca
ttgcgcgcagtccgtatcaaggaactgctcgtcgaattgaccaaataa
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integrated database retrieval system
